DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and kcna5

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_004912856.2 Gene:kcna5 / 496997 XenbaseID:XB-GENE-6037401 Length:616 Species:Xenopus tropicalis


Alignment Length:459 Identity:174/459 - (37%)
Similarity:253/459 - (55%) Gaps:78/459 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 PKKMQHYAHAA---------MNLINMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALAN 60
            |...||..|..         :.:::.:|..||::|:.|:|.||..:||.:.|.|.|....:.:..
 Frog   123 PHAQQHSHHHPEEEEDHQFDLGIMDHESNQRVIINIAGLRFETQLSTLNQFPDTLLGDPEKRMRF 187

  Fly    61 YDPILNEYFFDRHPGVFAQVLNYYRT-GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQ 124
            :||:.|||||||:...|..:|.:|:: ||:..|.:|...:|.:|:.|:.|....:|        :
 Frog   188 FDPLRNEYFFDRNRPSFDGILYFYQSGGKIRRPVNVSIDVFADEIRFYELGEEAME--------R 244

  Fly   125 HRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAK 189
            .|:.:..:.       |.|||..                    ..|.:.::|.:|:.|.||::|:
 Frog   245 FREDEGFIK-------DEEKPLP--------------------CNEFQRQVWLIFEYPESSSSAR 282

  Fly   190 TIGVVSVFFICISILSFCLKTHPDMR-----VPIVRNITVKTANGSNGWFLDKTQ------TNAH 243
            .|.:|||..|.|||::|||:|.|:.|     .|.:..:            |:.||      :...
 Frog   283 GIAIVSVLVILISIITFCLETLPEFRDENELPPALSKV------------LNDTQEHPSPPSGLT 335

  Fly   244 IAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLEN--- 305
            ..||.||..|..|||||:||||.:.|:|.:|.|:.:||||.:|.:.::|.|..: .|.|..|   
 Frog   336 DPFFIIETTCVIWFTFELLVRFFACPSKSDFSKNIMNIIDIVAIIPYFITLGTE-LAQHQTNNGQ 399

  Fly   306 ----ADILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAE 366
                ..||....::|:.|:|||:|||.||:||.||.:||.:||.||:|||.:|:::|:|.||:||
 Frog   400 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE 464

  Fly   367 RIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNF 431
            ...|..|  |:|||...|||:|||||||||||.|.|..|..||:|||:|||||||||||||||||
 Frog   465 ADDPESH--FSSIPDAFWWAVVTMTTVGYGDMRPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNF 527

  Fly   432 AMYY 435
            ..:|
 Frog   528 NYFY 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 32/98 (33%)
BTB_2 27..117 CDD:280393 32/90 (36%)
Ion_trans 244..439 CDD:278921 106/199 (53%)
Ion_trans_2 355..429 CDD:285168 47/73 (64%)
kcna5XP_004912856.2 BTB_POZ 152..278 CDD:365784 42/160 (26%)
Ion_trans 281..534 CDD:395416 125/266 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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