DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and Sh

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001303569.1 Gene:Sh / 32780 FlyBaseID:FBgn0003380 Length:655 Species:Drosophila melanogaster


Alignment Length:479 Identity:175/479 - (36%)
Similarity:248/479 - (51%) Gaps:100/479 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNYYRT-GKL 89
            |||:||.|:|.||...||.:.|.|.|......|..:||:.|||||||....|..:|.||:: |:|
  Fly    98 RVVINVSGLRFETQLRTLNQFPDTLLGDPARRLRYFDPLRNEYFFDRSRPSFDAILYYYQSGGRL 162

  Fly    90 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKF 154
            ..|.:|...:|.||::|:.|.                                     ::...||
  Fly   163 RRPVNVPLDVFSEEIKFYELG-------------------------------------DQAINKF 190

  Fly   155 GFEEDYYKGTISWWQEMKP--------RIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTH 211
            ..:|.:.|      :|.:|        ::|.||:.|.||.||:.:.::|||.|.:||:.|||:|.
  Fly   191 REDEGFIK------EEERPLPDNEKQRKVWLLFEYPESSQAARVVAIISVFVILLSIVIFCLETL 249

  Fly   212 PDMRVPIVRNITVKTANGSNGWFLDKTQT-NAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFI 275
            |:.:...|.|.|      :||..:::.:. :....||.||.:|..|||||:.|||::.|||..|.
  Fly   250 PEFKHYKVFNTT------TNGTKIEEDEVPDITDPFFLIETLCIIWFTFELTVRFLACPNKLNFC 308

  Fly   276 KSSVNIIDYIATLSFYIDLVL-------------------QRFASHLENADILEFFSIIRIMRLF 321
            :..:|:||.||.:.::|.|..                   .:.::...:..||....::|:.|:|
  Fly   309 RDVMNVIDIIAIIPYFITLATVVAEEEDTLNLPKAPVSPQDKSSNQAMSLAILRVIRLVRVFRIF 373

  Fly   322 KLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWA 386
            ||:|||.||:||.:|.:||.:||.||:|||.:|:|:|:|.||:||  ..:..:.|.|||.|.|||
  Fly   374 KLSRHSKGLQILGRTLKASMRELGLLIFFLFIGVVLFSSAVYFAE--AGSDSSFFKSIPDGFWWA 436

  Fly   387 LVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRV 451
            :|||||||||||.|....|..||:|||:|||||||||||||||||..:|            .|..
  Fly   437 VVTMTTVGYGDMRPVGVWGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY------------HRET 489

  Fly   452 LPVEQPRQ--------PRLPGAPG 467
            ...|...|        |.|||..|
  Fly   490 DQEEMQSQNFNHVTSCPYLPGTLG 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 36/98 (37%)
BTB_2 27..117 CDD:280393 36/90 (40%)
Ion_trans 244..439 CDD:278921 100/213 (47%)
Ion_trans_2 355..429 CDD:285168 46/73 (63%)
ShNP_001303569.1 BTB_2 99..187 CDD:280393 36/124 (29%)
BTB 99..182 CDD:197585 35/82 (43%)
Ion_trans 274..488 CDD:278921 100/227 (44%)
Ion_trans_2 403..479 CDD:285168 48/77 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
43.910

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