DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and rpl3702

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_588350.1 Gene:rpl3702 / 2538715 PomBaseID:SPCC1223.05c Length:91 Species:Schizosaccharomyces pombe


Alignment Length:55 Identity:14/55 - (25%)
Similarity:20/55 - (36%) Gaps:7/55 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   472 CGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLF-----AGPLGASIVA 521
            ||.|.:...|  ...|....||....|..:...|.|.:.|     :|...|::.|
pombe    37 CGYPAAKTRS--YNWGAKAKRRRTTGTGRMSYLKKVHRSFKNGFRSGKPAAAVAA 89

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585
BTB_2 27..117 CDD:280393
Ion_trans 244..439 CDD:278921
Ion_trans_2 355..429 CDD:285168
rpl3702NP_588350.1 PTZ00073 1..81 CDD:240257 11/45 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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