DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kvs-2

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001256236.1 Gene:kvs-2 / 183120 WormBaseID:WBGene00007862 Length:575 Species:Caenorhabditis elegans


Alignment Length:508 Identity:148/508 - (29%)
Similarity:235/508 - (46%) Gaps:108/508 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 KKMQHYAHAAMNLINMDSENRVV---------------------------LNVGG----IRHETY 39
            |::|...:||:...:|  |.||.                           |||||    :|.|.|
 Worm    65 KRLQAEENAAVQAASM--ERRVAFRPPPIGESRSTTITHDSGSNADTYMRLNVGGKSYYVRAELY 127

  Fly    40 KATLKKIPATRLSRLTEA--------LANYDPILNEYFFDRHPGVFAQVLNYYRTGKLHYPTDVC 96
            .:..     ||:..|.::        :..:|....||:.:|:..:...|::::.||.||.|.:||
 Worm   128 TSEW-----TRMHELLDSSHEERLKMVDGFDSKTGEYYLERNAKLTDHVMDFFVTGSLHKPQNVC 187

  Fly    97 GPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSE---EELARKFGFEE 158
            ...|:||||:|.:..:|:..||                        :.|||   .:|:|...|.|
 Worm   188 VERFKEELEYWKIKPDQLSTCC------------------------QIPSEHHVRKLSRGTSFNE 228

  Fly   159 DYYKGTISWWQEMKPRI--WSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMRVPI--- 218
            |.|...........||:  |...::|.||..|....::||||:..|::...|.:.|:.:...   
 Worm   229 DDYVTDFDGACFAGPRLAMWKFLEDPQSSVFAAVFALLSVFFVFASVVGLILGSMPEFQADSSNA 293

  Fly   219 ----VRNITVKTANGSNGW--------------FLDKTQTNAHIAFFYIECVCNAWFTFEILVRF 265
                |.::..:..:..|.:              |:.|...:.::....:|.:|..|||||.||||
 Worm   294 ATYHVMHVRSRPNDYGNKFGNDDDVAPNELLKDFVYKPTDSPNLPLTILEYICIGWFTFEYLVRF 358

  Fly   266 ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFA--SHLENAD----ILEFFSIIRIMRLFKLT 324
            ...|.|.:|:|.::||||....|.||:::.|..|.  |.|:...    ::....::|:.|:|||.
 Worm   359 TIYPRKRQFVKKTLNIIDLSTILPFYLEICLPLFGVESRLKEFTGAMLVVRVLRVLRMARVFKLA 423

  Fly   325 RHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWALVT 389
            |:|:.|:....|.::|..||::|..||:.|||.|::::||.|:  ..||.||.|||.|.||.:||
 Worm   424 RYSTSLQTFGHTLQSSITELSMLSMFLITGIVFFSTIMYYLEK--DEPHTDFYSIPAGCWWCVVT 486

  Fly   390 MTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARA 442
            |.||||||..|.|.:|..|....::.|::.:|.|:.:||..||.    .|.||
 Worm   487 MATVGYGDAKPVTTLGKLVATSTSICGIIVLAFPISMIVEKFAT----AQQRA 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 33/136 (24%)
BTB_2 27..117 CDD:280393 31/128 (24%)
Ion_trans 244..439 CDD:278921 78/200 (39%)
Ion_trans_2 355..429 CDD:285168 33/73 (45%)
kvs-2NP_001256236.1 BTB_POZ_Kv 111..199 CDD:349626 28/92 (30%)
Ion_trans 329..535 CDD:366146 80/211 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.