DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and kvs-5

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001294321.1 Gene:kvs-5 / 176899 WormBaseID:WBGene00021948 Length:600 Species:Caenorhabditis elegans


Alignment Length:459 Identity:127/459 - (27%)
Similarity:207/459 - (45%) Gaps:76/459 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LNVGGIRHETYKATLKKI----PATRLSRLTEALAN--------YDPILNEYFFDRHPGVFAQVL 81
            ||:||   .:|:...:.|    |.|.|.|.......        |....:||||:|.|..|..:.
 Worm   141 LNIGG---SSYRIRTRSIIKFGPKTLLGRFVRMNHEHRRQWADWYFEEQDEYFFERVPRYFDPIY 202

  Fly    82 NYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPS 146
            ::|.|||||.|.|:|...|..||.||.:..::::.|| ..:||:..|.            ...|.
 Worm   203 DFYATGKLHVPKDLCFDKFMAELRFWAVSKSRMDECC-SPFTQYCVTM------------GGDPK 254

  Fly   147 EEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTH 211
            ..:.|.:...|:|::.|...  ..::.|:|.:.:....|...|...::|..|:.:||.:..|.:.
 Worm   255 CTDEAAELQKEKDHFIGVRC--ANIRRRLWLILEGHSQSKWWKAFEIISTAFVVLSISALILGSI 317

  Fly   212 PDMRVP--------IVRNITVKTANGSNGWFLD-----------------------------KTQ 239
            |:.:||        :....|..|.....|..::                             |.:
 Worm   318 PEFQVPQKSEDGQLVYATATYPTYPNGGGMTIESRTVVREGSDNSTGDLMAEETVPTPRNTGKIE 382

  Fly   240 TNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLE 304
            ...|..|.::|.||..:|:.|..:|||.:|.|..|.:..:|:||.::...||.:|:|.......|
 Worm   383 MTEHPVFTWVENVCVIYFSIEYAMRFIVAPRKLAFARQILNVIDLLSIAPFYFELLLWICGISGE 447

  Fly   305 NAD-------ILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLV 362
            |..       .:....::|::|:.||.|.|.||.....|.|.|.|::.::...::..|:.|::|:
 Worm   448 NVRKVRWAFLTVRLLRVLRVIRIAKLGRFSPGLANFALTIRKSKKQMQMVGVVMMTVIIFFSTLI 512

  Fly   363 YYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVI 427
            |:.||.:|.  ..|.|||...||.:|||.||||||:.|.|..|..||:...:.||:.:|||:.::
 Worm   513 YFLERDEPG--TKFTSIPATFWWCVVTMATVGYGDLVPVTVAGKLVGSGAIVCGVMVLALPITIM 575

  Fly   428 VSNF 431
            |:||
 Worm   576 VNNF 579

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 35/107 (33%)
BTB_2 27..117 CDD:280393 32/99 (32%)
Ion_trans 244..439 CDD:278921 68/195 (35%)
Ion_trans_2 355..429 CDD:285168 32/73 (44%)
kvs-5NP_001294321.1 BTB_POZ_Kv 139..228 CDD:349626 30/89 (34%)
Ion_trans 377..587 CDD:366146 70/205 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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