DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and C40A11.6

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_494197.1 Gene:C40A11.6 / 173572 WormBaseID:WBGene00016549 Length:218 Species:Caenorhabditis elegans


Alignment Length:144 Identity:42/144 - (29%)
Similarity:58/144 - (40%) Gaps:44/144 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYD-PILNE----YFFDRHPGVFAQVLN 82
            ||..|.|||||...||:|:||     |:.....:.|...: |:..:    ||.||.|..|..|||
 Worm     4 SETIVKLNVGGSVFETWKSTL-----TKQDGFFKTLIETNVPVKKDTSDCYFIDRSPKYFETVLN 63

  Fly    83 YYRTGKLHYPTDVCGPLFEEEL-------EFWGLD---------SNQVEPCCWMTYTQHRDTQET 131
            |.|:|....|..      |:||       ||:.|:         .|::.     ||....:..:.
 Worm    64 YMRSGVTVLPDS------EKELQELKKEAEFYLLEHLVDLCEPIKNKIR-----TYGSSHELLQI 117

  Fly   132 LAVLDRLDLDTEKP 145
            :|       .|.||
 Worm   118 IA-------STNKP 124

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 36/118 (31%)
BTB_2 27..117 CDD:280393 34/110 (31%)
Ion_trans 244..439 CDD:278921
Ion_trans_2 355..429 CDD:285168
C40A11.6NP_494197.1 BTB_2 8..98 CDD:366986 33/100 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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