DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and Kcng3

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_596917.2 Gene:Kcng3 / 171011 RGDID:628832 Length:433 Species:Rattus norvegicus


Alignment Length:440 Identity:146/440 - (33%)
Similarity:221/440 - (50%) Gaps:54/440 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 VVLNVGGIRHETYKATLKKIPATRLSRL---------TEALANYDPILNEYFFDRHPGVFAQVLN 82
            |||||||.|:...:..||..|..|:|||         .|...:||...||||||||...|..:|.
  Rat    11 VVLNVGGARYSLSRELLKDFPLRRVSRLHGCRSERDVLEVCDDYDRERNEYFFDRHSEAFGFILL 75

  Fly    83 YYR-TGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPS 146
            |.| .|||.:...:|...|..|:.:|||:...:|.||............|....:.|..:..:|:
  Rat    76 YVRGHGKLRFAPRMCELSFYNEMIYWGLEGAHLEYCCQRRLDDRMSDTHTFHAAEELGREQPRPT 140

  Fly   147 EEELA--RKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLK 209
            ..|.|  |:             |.:.|:    ..|:||.||.||:.:..|||.|:.:|::..|..
  Rat   141 GPEAAPSRR-------------WLERMR----RTFEEPTSSLAAQILASVSVVFVIVSMVVLCAS 188

  Fly   210 THPDMRVPIVRNITVKTANGSNGWFLDKTQTNA---HIAFFYIECVCNAWFTFEILVRFISSPNK 271
            |.||.|.....|.::.          |:::.:|   ......||.:|..|||.|.:||||.|.||
  Rat   189 TLPDWRAAAADNRSLD----------DRSRYSASPGREPSGIIEAICIGWFTAECIVRFIVSKNK 243

  Fly   272 WEFIKSSVNIIDYIATLSFYIDLVLQRFA---SHLENADILEFFSIIRIMRLF---KLTRHSSGL 330
            .||:|..:||||.:|...:||.:::..|.   |.|:.|.:.  ..::|:||:|   ||.||..||
  Rat   244 CEFVKRPLNIIDLLAITPYYISVLMTVFTGENSQLQRAGVT--LRVLRMMRIFWVIKLARHFIGL 306

  Fly   331 KILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAER---IQPNPHNDFNSIPLGLWWALVTMTT 392
            :.|..|.:...:|:.:|:.|:.:.:.||::|....|.   ::.: :.||.|||...||.:::|||
  Rat   307 QTLGLTLKRCYREMVMLLVFICVAMAIFSALSQLLEHGLDLETS-NKDFASIPAACWWVIISMTT 370

  Fly   393 VGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARA 442
            ||||||.|.|..|..:|.:|.::|::.:|||:..|..:|...|...:.|:
  Rat   371 VGYGDMYPITVPGRILGGVCVVSGIVLLALPITFIYHSFVQCYHELKFRS 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 42/107 (39%)
BTB_2 27..117 CDD:280393 40/99 (40%)
Ion_trans 244..439 CDD:278921 75/203 (37%)
Ion_trans_2 355..429 CDD:285168 30/76 (39%)
Kcng3NP_596917.2 BTB 11..119 CDD:197585 42/107 (39%)
BTB 11..111 CDD:295341 40/99 (40%)
Ion_trans 216..417 CDD:278921 75/203 (37%)
Ion_trans_2 <360..405 CDD:285168 20/44 (45%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 370..375 4/4 (100%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D818306at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.820

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