DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and Kcnk4

DIOPT Version :10

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_006526780.1 Gene:Kcnk4 / 16528 MGIID:1298234 Length:427 Species:Mus musculus


Alignment Length:231 Identity:50/231 - (21%)
Similarity:81/231 - (35%) Gaps:81/231 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   348 VFFLVLGIVIFA---SLVY-YAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGM-- 406
            |.||::|.::|.   :.|: |.|        .::.:. .:::.:||:||||:||..|....|.  
Mouse   203 VLFLLIGCLLFVLTPTFVFSYME--------SWSKLE-AIYFVIVTLTTVGFGDYVPGDGTGQNS 258

  Fly   407 ----------FVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQPR 461
                      .:..|...|.|||       .:.|:....|. :.||::                 
Mouse   259 PAYQPLVWFWILFGLAYFASVLT-------TIGNWLRAVSR-RTRAEM----------------- 298

  Fly   462 LPGAPGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPLGASIVAMSPRT 526
                 ||::......:          ||...|:..:|.....|....|    ||..|.:...|  
Mouse   299 -----GGLTAQAASWT----------GTVTARVTQRTGPSAPPPEKEQ----PLLPSSLPAPP-- 342

  Fly   527 MLDLNPALAMGKPTFQPRIPTPL--AATPPPPVSSA 560
                    |:.:|..:|..|.|.  ..||.||.:||
Mouse   343 --------AVVEPAGRPGSPAPAEKVETPSPPTASA 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB_Shaw-like 24..135 CDD:349723
Ion_trans 188..439 CDD:459842 25/106 (24%)
PRK14959 <418..>585 CDD:184923 29/145 (20%)
Kcnk4XP_006526780.1 Ion_trans_2 <135..172 CDD:462301
Ion_trans_2 210..288 CDD:462301 20/93 (22%)
PLN02983 <322..>374 CDD:215533 17/63 (27%)
Blue background indicates that the domain is not in the aligned region.

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