DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and Kcna6

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_038596.1 Gene:Kcna6 / 16494 MGIID:96663 Length:529 Species:Mus musculus


Alignment Length:480 Identity:172/480 - (35%)
Similarity:239/480 - (49%) Gaps:120/480 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNYYRT- 86
            |..|:|:|:.|:|.||...||...|.|.|......:..:||:.|||||||:...|..:|.||:: 
Mouse    39 SSERLVINISGLRFETQLRTLSLFPDTLLGDPGRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSG 103

  Fly    87 GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELA 151
            |:|..|.:|...:|.||:.|:.|                                    .||.||
Mouse   104 GRLRRPVNVPLDIFMEEIRFYQL------------------------------------GEEALA 132

  Fly   152 RKFGFEEDYYKGTI-SWWQEMKP--------RIWSLFDEPYSSNAAKTIGVVSVFFICISILSFC 207
               .|.||  :|.: ...::.||        ::|.||:.|.||..|:.|.:|||..|.|||:.||
Mouse   133 ---AFRED--EGCLPEGGEDEKPLPSQPFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFC 192

  Fly   208 LKTHPDMRV---------------PIVRN---------------------------ITVKTANGS 230
            |:|.|..|.               |..|:                           .::.|..||
Mouse   193 LETLPQFRADGRGGSNEGSGTRLSPASRSHEEEDEDEDSYAFPGSIPSGGLGTGGTSSLSTLGGS 257

  Fly   231 NGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLV 295
              :|.|        .||.:|.:|..|||||:||||.:.|:|..|.::.:||||.:|...::|.|.
Mouse   258 --FFTD--------PFFLVETLCIVWFTFELLVRFSACPSKAAFFRNIMNIIDLVAIFPYFITLG 312

  Fly   296 LQRFASHLENA---------------DILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELT 345
            .:....|.:.:               .||....::|:.|:|||:|||.||:||.:|.:||.:||.
Mouse   313 TELVQRHEQQSVSGGSGQNGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGKTLQASMRELG 377

  Fly   346 LLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGA 410
            ||:|||.:|:::|:|.||:||  ..:..:.|.|||...|||:|||||||||||.|.|..|..||:
Mouse   378 LLIFFLFIGVILFSSAVYFAE--ADDVDSLFPSIPDAFWWAVVTMTTVGYGDMYPMTVGGKIVGS 440

  Fly   411 LCALAGVLTIALPVPVIVSNFAMYY 435
            |||:|||||||||||||||||..:|
Mouse   441 LCAIAGVLTIALPVPVIVSNFNYFY 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 33/98 (34%)
BTB_2 27..117 CDD:280393 33/90 (37%)
Ion_trans 244..439 CDD:278921 99/207 (48%)
Ion_trans_2 355..429 CDD:285168 45/73 (62%)
Kcna6NP_038596.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
BTB_POZ_KCNA6 41..170 CDD:349714 48/169 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..238 2/34 (6%)
Ion_trans 258..468 CDD:366146 101/218 (46%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 360..373 6/12 (50%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 422..427 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 488..513
PDZ-binding. /evidence=ECO:0000255 527..529
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.