DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and Kcna4

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_067250.2 Gene:Kcna4 / 16492 MGIID:96661 Length:654 Species:Mus musculus


Alignment Length:440 Identity:176/440 - (40%)
Similarity:242/440 - (55%) Gaps:71/440 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNYYRT 86
            |...|||:||.|:|.||...||.:.|.|.|....:....:||:.|||||||:...|..:|.||::
Mouse   174 DCCERVVINVSGLRFETQMKTLAQFPETLLGDPEKRTQYFDPLRNEYFFDRNRPSFDAILYYYQS 238

  Fly    87 -GKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEEL 150
             |:|..|.:|...:|.||::|:.|.                                     ||.
Mouse   239 GGRLKRPVNVPFDIFTEEVKFYQLG-------------------------------------EEA 266

  Fly   151 ARKF----GF---EEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCL 208
            ..||    ||   |||.....    .|.|.:||.||:.|.||:.|:.|.:|||..|.|||:.|||
Mouse   267 LLKFREDEGFVREEEDRALPE----NEFKKQIWLLFEYPESSSPARGIAIVSVLVILISIVIFCL 327

  Fly   209 KTHPDMRVPIVRNITVKTANGSNGWFLDKT-----QTNAHI----AFFYIECVCNAWFTFEILVR 264
            :|.|:.|..  |::.:..:.|.:...|:.|     :.:.|.    .||.:|.||..||:||.:||
Mouse   328 ETLPEFRDD--RDLIMALSAGGHSRLLNDTSAPHLENSGHTIFNDPFFIVETVCIVWFSFEFVVR 390

  Fly   265 FISSPNKWEFIKSSVNIIDYIATLSFYI----DLVLQRFASHLENAD-----ILEFFSIIRIMRL 320
            ..:.|::..|.|:.:||||.::.|.::|    ||..|:...:.:...     ||....::|:.|:
Mouse   391 CFACPSQALFFKNIMNIIDIVSILPYFITLGTDLAQQQGGGNGQQQQAMSFAILRIIRLVRVFRI 455

  Fly   321 FKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWW 385
            |||:|||.||:||..|.|||.:||.||:|||.:|:::|:|.||:||..:|..|  |.|||...||
Mouse   456 FKLSRHSKGLQILGHTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPTTH--FQSIPDAFWW 518

  Fly   386 ALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYY 435
            |:|||||||||||.|.|..|..||:|||:|||||||||||||||||..:|
Mouse   519 AVVTMTTVGYGDMKPITVGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 35/98 (36%)
BTB_2 27..117 CDD:280393 35/90 (39%)
Ion_trans 244..439 CDD:278921 101/205 (49%)
Ion_trans_2 355..429 CDD:285168 47/73 (64%)
Kcna4NP_067250.2 K_channel_TID 1..>37 CDD:369607
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 24..145
BTB_POZ 177..304 CDD:365784 52/167 (31%)
Ion_trans 307..571 CDD:366146 121/266 (45%)
S4-S5 linker. /evidence=ECO:0000250|UniProtKB:P63142 463..476 7/12 (58%)
Selectivity filter. /evidence=ECO:0000250|UniProtKB:P63142 525..530 4/4 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 630..654
PDZ-binding. /evidence=ECO:0000250 652..654
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.