DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and Kcna3

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_032444.2 Gene:Kcna3 / 16491 MGIID:96660 Length:528 Species:Mus musculus


Alignment Length:515 Identity:179/515 - (34%)
Similarity:258/515 - (50%) Gaps:114/515 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 RVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDRHPGVFAQVLNYYRT-GKL 89
            |||:|:.|:|.||...||.:.|.|.|......:..:||:.|||||||:...|..:|.||:: |::
Mouse    58 RVVINISGLRFETQLKTLCQFPETLLGDPKRRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRI 122

  Fly    90 HYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKPSEEELARKF 154
            ..|.:|...:|.||:.|:.|.                                     ||...||
Mouse   123 RRPVNVPIDIFSEEIRFYQLG-------------------------------------EEAMEKF 150

  Fly   155 GFEEDYYKGTISWWQEMKP--------RIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTH 211
            ..:|.:.:      :|.:|        ::|.||:.|.||..|:.|.:|||..|.|||:.|||:|.
Mouse   151 REDEGFLR------EEERPLPRRDFQRQVWLLFEYPESSGPARGIAIVSVLVILISIVIFCLETL 209

  Fly   212 PDMR-------------VPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILV 263
            |:.|             .....|.|....:|::. |.|        .||.:|.:|..||:||:||
Mouse   210 PEFRDEKDYPASPSQDVFEAANNSTSGAPSGASS-FSD--------PFFVVETLCIIWFSFELLV 265

  Fly   264 RFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENAD------ILEFFSIIRIMRLFK 322
            ||.:.|:|..|.::.:|:||.:|.:.::|.|..: .|....|..      ||....::|:.|:||
Mouse   266 RFFACPSKATFSRNIMNLIDIVAIIPYFITLGTE-LAERQGNGQQAMSLAILRVIRLVRVFRIFK 329

  Fly   323 LTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWAL 387
            |:|||.||:||.||.:||.:||.||:|||.:|:::|:|.||:||  ..:|.:.|||||...|||:
Mouse   330 LSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE--ADDPSSGFNSIPDAFWWAV 392

  Fly   388 VTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYY----------------- 435
            |||||||||||.|.|..|..||:|||:|||||||||||||||||..:|                 
Mouse   393 VTMTTVGYGDMHPVTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRETEGEEQAQYMHVGS 457

  Fly   436 -SHTQARAKLPKKRR--------RVLPVEQPRQ-----PRLPGAPGGVSGCGTPGSGPHS 481
             .|..:.|:..:|.|        ..:.:|:...     |:.|...|..:...|..:.|:|
Mouse   458 CQHLSSSAEELRKARSNSTLSKSEYMVIEEGGMNHSAFPQTPFKTGNSTATCTTNNNPNS 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 33/98 (34%)
BTB_2 27..117 CDD:280393 33/90 (37%)
Ion_trans 244..439 CDD:278921 102/218 (47%)
Ion_trans_2 355..429 CDD:285168 47/73 (64%)
Kcna3NP_032444.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..32
BTB 59..153 CDD:197585 37/130 (28%)
BTB_2 59..150 CDD:280393 35/127 (28%)
Ion_trans 243..443 CDD:278921 103/211 (49%)
Ion_trans_2 357..434 CDD:285168 50/78 (64%)
Selectivity filter. /evidence=ECO:0000250 397..402 4/4 (100%)
PDZ-binding. /evidence=ECO:0000250 526..528
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2126
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.810

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