DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and LOC100497714

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_012822914.1 Gene:LOC100497714 / 100497714 -ID:- Length:621 Species:Xenopus tropicalis


Alignment Length:642 Identity:275/642 - (42%)
Similarity:360/642 - (56%) Gaps:125/642 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NMDSENRVVLNVGGIRHETYKATLKKIPATRLSRLTE--ALAN--YDPILNEYFFDRHPGVFAQV 80
            |.||: ::|:||||||||||::|||.:|.||||.|||  |.:|  |||..:|:||||||.|||.|
 Frog    32 NEDSD-KIVINVGGIRHETYRSTLKTLPGTRLSWLTEPDAFSNFDYDPKTDEFFFDRHPQVFAYV 95

  Fly    81 LNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLDTEKP 145
            ||||||||||.|.||||||:||||.|||:|...||.||||.|.||||.:|.|.     ..:|.:|
 Frog    96 LNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEACCWMNYRQHRDAEEALD-----SFETPEP 155

  Fly   146 SEEEL---ARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFC 207
            :|||.   .::...:||..|  :..|:.::|::|:||::||||.||:.|...|:|||.|||.:||
 Frog   156 TEEEEDGDLKRLCLQEDGRK--LGRWKRLQPKVWALFEDPYSSKAARYIAFASLFFILISITTFC 218

  Fly   208 LKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIA----FFYIECVCNAWFTFEILVRFISS 268
            |:||....  .|.|.|.....|:    :.:|:|...:.    ..|:|.:|..|||||.|:|.|..
 Frog   219 LETHEAFN--DVNNKTEVFTQGN----ITRTETILEMETEPFLTYVEGICVIWFTFEFLIRVIFC 277

  Fly   269 PNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFFSI---IRIMRLFKLTRHSSGL 330
            |:|.||||||:||||::|.|.||:::.|...:|.... |:|.|..:   :||:|:||||||..||
 Frog   278 PDKMEFIKSSLNIIDFVAILPFYLEIGLSGLSSKAAK-DVLGFLRVVRFVRILRIFKLTRHFVGL 341

  Fly   331 KILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNP-------HNDFNSIPLGLWWALV 388
            ::|..|.|||..|..||:.||.||::|||:::||||||...|       |.||.:||:|.|||:|
 Frog   342 RVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAAPDDITGSKHTDFKNIPIGFWWAVV 406

  Fly   389 TMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKRRRVLP 453
            ||||:|||||.|.|:.||.||||||||||||||:||||||:||.||||...|:.|||||:.:.:|
 Frog   407 TMTTLGYGDMYPVTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMAKQKLPKKKNKHIP 471

  Fly   454 VEQPRQPRLPGAPGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLFAGPLGAS 518
                 :|..||:|                            |....||.||...||..|.||...
 Frog   472 -----RPPQPGSP----------------------------NYCKPDLQSPHRSAQGDACPLAQE 503

  Fly   519 IV-----AMSPRTMLDLNPALAMGK-PTFQPRIPTPLAATPPPP--------------------- 556
            .:     |.|.:.....|.|||... ||....: :|...:|..|                     
 Frog   504 EIIEINRADSKQNGDAANAALANEDCPTIDQAL-SPEEKSPVTPGGRERYNRDRACFLLSTGDFA 567

  Fly   557 ----------------VSSAGGMTASGIGTTSATGATSAP--------QPATPLPSI 589
                            ::|..||:    |.|......|.|        :|.:|:|||
 Frog   568 HSPDGNIRKGYEKSRSLNSIAGMS----GNTLRLSPISTPFGSPSAVRRPRSPIPSI 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 70/101 (69%)
BTB_2 27..117 CDD:280393 65/93 (70%)
Ion_trans 244..439 CDD:278921 114/208 (55%)
Ion_trans_2 355..429 CDD:285168 52/80 (65%)
LOC100497714XP_012822914.1 Potassium_chann 1..29 CDD:314363
BTB_KCNC1_3 34..150 CDD:349721 78/121 (64%)
Ion_trans 199..457 CDD:366146 134/264 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 247 1.000 Domainoid score I2104
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 458 1.000 Inparanoid score I1532
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D331021at33208
OrthoFinder 1 1.000 - - FOG0000990
OrthoInspector 1 1.000 - - otm48109
Panther 1 1.100 - - O PTHR11537
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.070

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