DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcng2

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_017950308.2 Gene:kcng2 / 100497537 XenbaseID:XB-GENE-954003 Length:489 Species:Xenopus tropicalis


Alignment Length:494 Identity:149/494 - (30%)
Similarity:231/494 - (46%) Gaps:84/494 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YIPKKMQHYAHAAMNLINMDSENR-VVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL- 65
            |...|:.|......|...::...| |::|||||::.....||:..|.|||.:| :...|||.|: 
 Frog    38 YKTAKLLHPGEERCNRGQLEDRTRHVIINVGGIKYRIPWTTLENCPLTRLGKL-KTCNNYDEIMD 101

  Fly    66 ---------NEYFFDRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMT 121
                     ||:||||:|..|..::.:...|||....::|...|:|||.:||::..|:|.||...
 Frog   102 VCDDYDINCNEFFFDRNPCAFRTIMTFLAAGKLRILREMCALSFQEELIYWGIEEEQLEWCCLRK 166

  Fly   122 YTQHRDTQETLAVLDRLDLDTEKPSEEELARKFGFEEDYYKGTISWWQE---------------M 171
            ..|                     .|||||     |...|:|......|               |
 Frog   167 LQQ---------------------KEEELA-----EAKMYEGESGISNENSQSALQDSGRLAQCM 205

  Fly   172 KPRIWSLFDEPYSSNAAKTIGVVSVFFICISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLD 236
            | .:..:.:.|:|....|....:||.|:.|:.:|.|:.|.||.|           .....|....
 Frog   206 K-HLRDMVENPHSGIPGKIFACLSVSFVAITAVSLCISTMPDFR-----------DEEDRGECSQ 258

  Fly   237 KTQTNAHIAFFYIECVCNAWFTFEILVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFA- 300
            |...     .|.:|.||.|||:.|.::|||.:.:|..|:::.:|:||.:|.|.:||.|::...: 
 Frog   259 KCYD-----IFVLETVCVAWFSLEFVLRFIQAESKCVFLRTPLNMIDIMAILPYYITLIVDALSG 318

  Fly   301 --------SHLENAD-ILEFFSIIRIMRLFKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIV 356
                    ::||... :|.....:||:.:.:|.|||.||:.|..|.|...:|..||:.||.:.:.
 Frog   319 GKTGGAGNNYLEKVGLVLRVLRALRILYVMRLARHSLGLQTLGLTVRRCTREFGLLLLFLCVAMA 383

  Fly   357 IFASLVYYAERIQPNPHNDFNSIPLGLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIA 421
            :|:.|||.||. :.....:|.|||...|||:::|||||||||.|::..|..|.....|:|:|.:|
 Frog   384 LFSPLVYLAEN-ELGAKQEFTSIPGSYWWAVISMTTVGYGDMVPRSIPGQVVALSSILSGILLMA 447

  Fly   422 LPVPVIVSNFAMYYSHTQARAKLPKKRRRVLPVEQPRQP 460
            .||..|...|:..|:..:.:   .::..|.:|..:.|:|
 Frog   448 FPVTSIFHTFSRSYTELKEQ---QQRASRQIPRLEDREP 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 39/107 (36%)
BTB_2 27..117 CDD:280393 37/99 (37%)
Ion_trans 244..439 CDD:278921 74/204 (36%)
Ion_trans_2 355..429 CDD:285168 32/73 (44%)
kcng2XP_017950308.2 BTB_POZ_KCNG1_2 58..171 CDD:349728 41/134 (31%)
Ion_trans 222..465 CDD:395416 87/259 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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