DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcng4

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_002934997.1 Gene:kcng4 / 100497160 XenbaseID:XB-GENE-985941 Length:506 Species:Xenopus tropicalis


Alignment Length:522 Identity:149/522 - (28%)
Similarity:245/522 - (46%) Gaps:103/522 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 DSENRVVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPIL----------NEYFFDRHPGV 76
            |.:..:::|||||::....:||.:.|.|||.:| ...::|:.|:          ||:||||:|..
 Frog    57 DLKREIIINVGGIKYLMPWSTLDEFPMTRLGKL-RFCSSYEEIIQICDDFDEDTNEFFFDRNPCA 120

  Fly    77 FAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDRLDLD 141
            |:.::::...|||....::|...|::||.:||::.:::|.||.....|            :|:..
 Frog   121 FSMIVSFLAAGKLRLLREMCALSFQDELTYWGIEESKLERCCLRKLFQ------------KLEEL 173

  Fly   142 TEKPSEEELARKFGFEEDYYKGTISWWQE------MKPRIWSLFDEPYSSNAAKTIGVVSVFFIC 200
            .|...|||..|.        :.||...::      ...::..:.:.|.|....|....:|:.|:.
 Frog   174 AEIRKEEEAQRN--------RETICVLEDNTKVGHCMGKLRDMVENPQSGIPGKVFACLSIIFVA 230

  Fly   201 ISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF 265
            .:.::.|:.|.||:|           |....|   :.:|...:|  |.||.:|.|||:.|..:||
 Frog   231 TTAINLCVSTMPDLR-----------AEEDRG---ECSQMCYNI--FIIETICVAWFSLEFFLRF 279

  Fly   266 ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQ---------RFASHLENAD-ILEFFSIIRIMRL 320
            |.:.:|.:|.|..:||||.:|.|.:|:.|:::         ...|:||... :|.....:||:.:
 Frog   280 IQAKSKCQFFKGPLNIIDVLAILPYYVSLIVEDEQKTVDKPSSNSYLEKIGLVLRVLRALRILYV 344

  Fly   321 FKLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAE----RIQPNPHNDFNSIPL 381
            .:|.|||.||:.|..|.|...:|..||:.||.:.:.:||.||:.||    |.|     :|.|:|.
 Frog   345 MRLARHSLGLQTLGLTVRRCTREFGLLLLFLCVAVTLFAPLVHLAENEMGRCQ-----EFTSVPA 404

  Fly   382 GLWWALVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPK 446
            ..|||:::|||||||||.|::..|..|.....|:|:|.:|.|...|...|:..||      :|.:
 Frog   405 SYWWAIISMTTVGYGDMVPRSIPGQVVALSSILSGILIMAFPATSIFHTFSRCYS------ELKR 463

  Fly   447 KRRRVLPVEQPRQPRLPGAPGGVSGCGTPGSGPHSGPMGSGGTGPRRMNNKTKDLVSPKSVAQLF 511
            ::.|:    |.|..||..|                     ..:|.....|.|..|||.::....:
 Frog   464 EQERL----QSRLMRLKDA---------------------NQSGESDTFNDTDSLVSEEAYKYFY 503

  Fly   512 AG 513
            .|
 Frog   504 NG 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 34/107 (32%)
BTB_2 27..117 CDD:280393 32/99 (32%)
Ion_trans 244..439 CDD:278921 78/208 (38%)
Ion_trans_2 355..429 CDD:285168 32/77 (42%)
kcng4XP_002934997.1 BTB_POZ_KCNG4 59..170 CDD:349730 35/123 (28%)
Ion_trans 219..462 CDD:366146 89/269 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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