DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcnk5

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_017945689.1 Gene:kcnk5 / 100489489 XenbaseID:XB-GENE-979847 Length:478 Species:Xenopus tropicalis


Alignment Length:112 Identity:27/112 - (24%)
Similarity:50/112 - (44%) Gaps:39/112 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 RLFK------LTRHS----SGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPH 373
            :|:|      |.:||    ..|:.:::|..::|.:          |:.|..:..:          
 Frog    36 QLYKENKVKILAKHSCLTPRDLEEILETVSSAAGQ----------GVTITGNTTF---------- 80

  Fly   374 NDFNSIPLGLWWALVTMTTVGYGDMAPKT--------YIGMFVGALC 412
            |::| .|..:.:|...:||:|||::||||        :.|:|...||
 Frog    81 NNWN-WPNAVIFAATVITTIGYGNIAPKTSAGRLFCIFYGLFGVPLC 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585
BTB_2 27..117 CDD:280393
Ion_trans 244..439 CDD:278921 27/112 (24%)
Ion_trans_2 355..429 CDD:285168 18/66 (27%)
kcnk5XP_017945689.1 Ion_trans_2 <82..137 CDD:369572 16/46 (35%)
Ion_trans_2 165..243 CDD:369572
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.