DRSC/TRiP Functional Genomics Resources

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Protein Alignment Shaw and kcnb1

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_031750650.1 Gene:kcnb1 / 100489405 XenbaseID:XB-GENE-982937 Length:875 Species:Xenopus tropicalis


Alignment Length:452 Identity:180/452 - (39%)
Similarity:262/452 - (57%) Gaps:58/452 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 MNLINMDS-ENRVVLNVGGIRHETYKATLKKIPATRLSR---------LTEALANYDPILNEYFF 70
            |::|...: ..||.|||||:.||....||.::|.|||.:         |.|...:|:...|||||
 Frog    21 MDIIRSKACSRRVKLNVGGLAHEVLWRTLDRLPRTRLGKLRDCNTHECLMEICDDYNLEENEYFF 85

  Fly    71 DRHPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVL 135
            |||||.|..:||:|||||||...::|...|.:||::||:|...:|.||...|.|.::        
 Frog    86 DRHPGAFTSILNFYRTGKLHMMEEMCALSFSQELDYWGIDEIYLESCCQARYHQKKE-------- 142

  Fly   136 DRLDLDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRIWSLFDEPYSSNAAKTIGVVSVFFIC 200
               .::.|...|.|..|:...||  :..|..  .:.:.::|.|.::|.||.|||.:.::|:.||.
 Frog   143 ---QMNEELKREAETLREREGEE--FDNTCC--ADKRKKLWDLLEKPNSSVAAKILAIISILFIV 200

  Fly   201 ISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEILVRF 265
            :|.::..|.|.||::             |.:.:  .:|..|..:|  ::|.||.||||.|.|:||
 Frog   201 LSTIALSLNTLPDLQ-------------GIDEF--GQTTDNPQLA--HVEAVCIAWFTMEYLLRF 248

  Fly   266 ISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEF---------FSIIRIMRLF 321
            :||||||:|.|..:|:||.:|.|.:|:.:.|..     .|..:|:|         |.|:||:|:.
 Frog   249 LSSPNKWKFFKGPLNVIDLLAILPYYVTIFLTE-----SNKSVLQFQNVRRVVQIFRIMRILRIL 308

  Fly   322 KLTRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWA 386
            ||.|||:||:.|..|.|.|..||.||:.||.:||:||:|||::||:.:.:  ..|.|||...|||
 Frog   309 KLARHSTGLQSLGFTLRRSYNELGLLILFLAMGIMIFSSLVFFAEKDEED--TKFKSIPASFWWA 371

  Fly   387 LVTMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFAMYYSHTQARAKLPKKR 448
            .:|||||||||:.|||.:|..||.||.:||||.||||:|:||:||:.:|...:.:.|..|:|
 Frog   372 TITMTTVGYGDIYPKTLLGKIVGGLCCIAGVLVIALPIPIIVNNFSEFYKEQKRQEKAIKRR 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 48/106 (45%)
BTB_2 27..117 CDD:280393 45/98 (46%)
Ion_trans 244..439 CDD:278921 99/203 (49%)
Ion_trans_2 355..429 CDD:285168 42/73 (58%)
kcnb1XP_031750650.1 BTB_POZ_KCNB2 15..141 CDD:349719 52/119 (44%)
Ion_trans 188..424 CDD:395416 112/259 (43%)
Kv2channel 467..720 CDD:397541
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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