DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Shaw and kcnd3

DIOPT Version :9

Sequence 1:NP_001137782.1 Gene:Shaw / 33599 FlyBaseID:FBgn0003386 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001096411.1 Gene:kcnd3 / 100125015 XenbaseID:XB-GENE-5867971 Length:653 Species:Xenopus tropicalis


Alignment Length:626 Identity:195/626 - (31%)
Similarity:302/626 - (48%) Gaps:110/626 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 AHAAMNLINMDSENR----VVLNVGGIRHETYKATLKKIPATRLSRLTEALANYDPILNEYFFDR 72
            |:..|.|...|...|    ::|||.|.|.:|::.||::.|.|.|.. ||....::....||||||
 Frog    23 ANCPMPLAPADKNKRQDEVIILNVSGRRFQTWRTTLERYPDTLLGS-TEKEFFFNEETKEYFFDR 86

  Fly    73 HPGVFAQVLNYYRTGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTYTQHRDTQETLAVLDR 137
            .|.||..:||:|||||||||...|...::|||.|:|:....:..||   |.:::|.:...|  :|
 Frog    87 DPEVFRCILNFYRTGKLHYPRYECISAYDEELAFYGILPEIIGDCC---YEEYKDRKRENA--ER 146

  Fly   138 LDLDTEKPSEEELARKFGFEEDYYKGTISWWQEMKPRI------WSLFDEPYSSNAAKTIGVVSV 196
            |..|.|            ||.:         ||..|.:      |..|:.|::|..|.....|:.
 Frog   147 LMDDNE------------FENN---------QEAMPSLTLRQTMWRAFENPHTSTLALVFYYVTG 190

  Fly   197 FFICISILSFCLKTHPDMRVPIVRNITVKTANGSNGWFLDKTQTNAHIAFFYIECVCNAWFTFEI 261
            |||.:|:::..::|.|...||..:.:..       |...|       :|||.::..|...||.|.
 Frog   191 FFIAVSVITNVVETVPCGTVPGNKELPC-------GERYD-------VAFFCLDTACVMIFTVEY 241

  Fly   262 LVRFISSPNKWEFIKSSVNIIDYIATLSFYIDLVLQRFASHLENADILEFF---SIIRIMRLFKL 323
            |:|..::|:::.|::|.::|||.:|.:.:||.||:      ..|.|:...|   .:.|:.|:||.
 Frog   242 LLRLFAAPSRYRFMRSVMSIIDVVAIMPYYIGLVM------TNNEDVSGAFVTLRVFRVFRIFKF 300

  Fly   324 TRHSSGLKILIQTFRASAKELTLLVFFLVLGIVIFASLVYYAERIQPNPHNDFNSIPLGLWWALV 388
            :|||.||:||..|.::.|.||..|:|.|.:.|:|||::::|||:  .:..:.|.|||...|:.:|
 Frog   301 SRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEK--GSSSSKFTSIPASFWYTIV 363

  Fly   389 TMTTVGYGDMAPKTYIGMFVGALCALAGVLTIALPVPVIVSNFA-MYYSHTQARAKLPKKRRRVL 452
            ||||:|||||.|||..|...|::|:|:|||.||||||||||||: :|:.:.:|..:..:|:.|:.
 Frog   364 TMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVIVSNFSRIYHQNQRADKRRAQKKARLA 428

  Fly   453 PVEQPRQPRLPGAPGGVSGCGTPGSGPHSGPMG--------SGGTGPRRMNNKTKDLVSPK---- 505
            .:.             |:..|:..:..||...|        .|.|....: .|:..|:..:    
 Frog   429 RIR-------------VAKTGSSTAYLHSKRNGLLNEALELMGSTEEPHI-GKSASLIESQHHHL 479

  Fly   506 --------SVAQLFAGPLGASIVAMSPRTMLDLNPALAMGKPTFQPRIPTPLAATPP----PPVS 558
                    .::.|...||      :|.||....|... |.:..|:...........|    |.:|
 Frog   480 LHCLEKTTGLSYLVDDPL------LSVRTSTMKNHEF-MDEQMFEQNCRESSMQNYPSSRSPSLS 537

  Fly   559 SAGGMTASGIG--TTSATGATSAPQPATPLPSIAVSTTASV 597
            |..|:|.|...  ....|...::..|||.|.|:...:|..:
 Frog   538 SNHGLTTSCCSRRNKKTTHLPNSNVPATRLRSMQELSTIHI 578

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ShawNP_001137782.1 BTB 27..125 CDD:197585 42/97 (43%)
BTB_2 27..117 CDD:280393 39/89 (44%)
Ion_trans 244..439 CDD:278921 86/198 (43%)
Ion_trans_2 355..429 CDD:285168 40/73 (55%)
kcnd3NP_001096411.1 Shal-type 3..28 CDD:288455 1/4 (25%)
BTB 42..139 CDD:197585 42/100 (42%)
BTB_2 42..131 CDD:280393 39/89 (44%)
Ion_trans 217..412 CDD:278921 88/216 (41%)
Ion_trans_2 328..408 CDD:285168 45/81 (56%)
DUF3399 442..563 CDD:288712 24/128 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X19
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.