DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG2818 and SNC4

DIOPT Version :10

Sequence 1:NP_608804.1 Gene:CG2818 / 33597 FlyBaseID:FBgn0031566 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001323206.1 Gene:SNC4 / 843016 AraportID:AT1G66980 Length:1147 Species:Arabidopsis thaliana


Alignment Length:484 Identity:90/484 - (18%)
Similarity:150/484 - (30%) Gaps:190/484 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   200 NLS-IPSAGCDTMLPSS---PMED--------SLSNDTHDTKENGGESSTAFAFSEVVTLSADEC 252
            ||| :.:.....::|.|   |::|        ||..|.|    ..|....|..|:..|.::    
plant   260 NLSFVKTFASGILVPKSYILPLDDKQYLLPHTSLVQDAH----KAGLKLYASGFANDVDIA---- 316

  Fly   253 EIRSQEQFGTGCGPTDLVIFHLTVGDFENTAYL----------IDLYSYSSRVAKEDGPPNHLGY 307
                   :.....|....:..:..|:|.....|          :|.:|:..|.|.:.|...:|.|
plant   317 -------YNYSWDPVSEYLSFVDNGNFSVDGMLSDFPLTASASVDCFSHIGRNATKQGNECNLLY 374

  Fly   308 -----------HYVLPNLFKRSEGNLELPITCAKGHRPLGMMRLGYLIVKPSSLCALMDMSVSYA 361
                       ||.|| :.:.|...|.:....|.|..| |..:|.|                   
plant   375 ISFLFLLIEQKHYHLP-MVRASVDFLVISKNGASGEYP-GCTKLAY------------------- 418

  Fly   362 RYWNSKWTGLDVGHRGSGTSFKAKDAVIRENTITSLKNAAEHGADMVEFDVQLSKDLVP------ 420
                                                :.|.:.|:|:::..||:|.|.:|      
plant   419 ------------------------------------EKAIKDGSDVIDCPVQMSSDGIPFCSSSI 447

  Fly   421 -VVYHDFMIYVSLKSKC---------------SLQEHDFLAL------PMRELSLEQLKKLKVYH 463
             :|....:....|:::.               ||..|:..:|      |.||             
plant   448 DLVNSTTVGQTHLRNRSIIVPEISSVAGIFTFSLTWHEIQSLTPAISNPFRE------------- 499

  Fly   464 IAEGLSRETRSFHNDDCLEHQPFPQLCDVLDALDVHVGFNIEIKWSQRLEDGKMEEEFEHVVDR- 527
              .|:||.....::.:.:....|..|.....:|.   |..|.::....|.:.|..:..:.|::| 
plant   500 --NGMSRNPNERNSGNLISLYEFLNLAKNSTSLS---GILISLENVVYLREKKGLDVVKVVLNRL 559

  Fly   528 --NLYIDCILDVILRKAGNRRIVLSCF--------------------DPDICTILRF-------K 563
              ..||...|.|:::  ...|:||..|                    |..|..|.:|       |
plant   560 TETGYIVGTLKVMIQ--STTRLVLVDFKNQSTYKTVYKIKETIGNITDSAIEDIKKFANAVVINK 622

  Fly   564 QNRYP--VMFLTLGRTT----KYQKYMDP 586
            .:.:|  ..||| |:||    :.||:..|
plant   623 ASVFPNSDSFLT-GQTTNVLERLQKFQLP 650

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG2818NP_608804.1 CBM20_Prei4 44..166 CDD:99888
GDPD_GDE5 371..659 CDD:176549 52/280 (19%)
SNC4NP_001323206.1 GDPD_SHV3_repeat_1 51..352 CDD:176545 19/106 (18%)
GDPD_SHV3_repeat_2 398..698 CDD:176546 59/330 (18%)
STKc_IRAK 840..1110 CDD:270968
Blue background indicates that the domain is not in the aligned region.

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