DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3513 and Col28a1

DIOPT Version :10

Sequence 1:NP_608798.1 Gene:CG3513 / 33590 FlyBaseID:FBgn0031559 Length:88 Species:Drosophila melanogaster
Sequence 2:NP_001418648.1 Gene:Col28a1 / 312115 RGDID:1564680 Length:1141 Species:Rattus norvegicus


Alignment Length:42 Identity:16/42 - (38%)
Similarity:25/42 - (59%) Gaps:0/42 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 CMAFMPAWTYDASKNACTEFIFGGCGGNSNQFSTKSECEKAC 86
            |..::..|.||...|:|..|.|.||.|:.|:|.::.||::.|
  Rat  1097 CGDYVVRWYYDKQVNSCARFWFSGCNGSGNRFHSEKECQETC 1138

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3513NP_608798.1 Kunitz_SCI-I-like 28..86 CDD:438677 15/40 (38%)
Col28a1NP_001418648.1 vWFA_subfamily_ECM 47..212 CDD:238727
gly_rich_SclB <257..446 CDD:468478
gly_rich_SclB <363..632 CDD:468478
Collagen 713..772 CDD:460189
VWA 798..974 CDD:459670
Kunitz-type 1088..1138 CDD:444694 15/40 (38%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.