DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment odd and Sp2

DIOPT Version :9

Sequence 1:NP_722922.1 Gene:odd / 33583 FlyBaseID:FBgn0002985 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_084496.2 Gene:Sp2 / 78912 MGIID:1926162 Length:613 Species:Mus musculus


Alignment Length:428 Identity:94/428 - (21%)
Similarity:137/428 - (32%) Gaps:136/428 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SSTSASPI-------------SNITVDDEL-NLSREQDFAEEDFIVI-----------KEERETS 41
            |||:.:|:             ||:|:...| ||....|......::.           |:.|:.|
Mouse   187 SSTTTTPVQSGANVVKLTGGGSNMTLTLPLNNLVNTSDIGGPAQLLTESPPTPLSKTNKKARKKS 251

  Fly    42 LSPMLTPPHTPTEEPLRRV--------------------HPAISEEAVATQLHMRHMAHYQQQQQ 86
            |.  ::.|.....|.:..|                    .|...:.||..|:.:......|||..
Mouse   252 LP--VSQPSVAVAEQVETVLIETTADNIIQAGNNLLIVQSPGGGQPAVVQQVQVVPPKAEQQQVV 314

  Fly    87 QQQQQQQHRLWLQMQQQQQQHQAPQQYPVYPTASADPVAVHQQLMNHWIRNAAIYQQ-------- 143
            |..||....:...........|.|.|.....|....|..|:.:..:..::...:...        
Mouse   315 QIPQQALRVVQAASATLPTVPQKPSQNFQIQTTEPTPTQVYIRTPSGEVQTVLVQDSPPATAATT 379

  Fly   144 -----QQQQQQHPH-----HHHHHGHPHHPHPHPHHVRPYPAG-LHSLHAAVMGRHFGAMPTLKL 197
                 .....:.||     ..|.........|.|   :..||| :.||:||.:.....||.|:.:
Mouse   380 STVTCNSPALRAPHLSGTSKKHSAAILRKERPLP---KIAPAGSIISLNAAQLAAAAQAMQTINI 441

  Fly   198 GGAGGASGVP------------------------SGAT-------------GSSRP--------- 216
            .|. ...|||                        ||.:             |.::|         
Mouse   442 NGV-QVQGVPVTITNTGGQQQLTVQNVSGNNLTISGLSPTQIQLQMEQALAGEAQPGEKRRRMAC 505

  Fly   217 ----------------KKQFICKY--CNRQFTKSYNLLIHERTHTDERPYSCD--ICGKAFRRQD 261
                            ||:.:|..  |.:.|.|:..|..|.|.||.|||:.|:  .|||.|.|.|
Mouse   506 TCPNCKDGEKRSGEQGKKKHVCHIPDCGKTFRKTSLLRAHVRLHTGERPFVCNWFFCGKRFTRSD 570

  Fly   262 HLRDHRYIHSKDKPFKCSDCGKGFCQSRTLAVHKVTHL 299
            .|:.|...|:.||.|:|:.|.|.|.:|..|..|..|||
Mouse   571 ELQRHARTHTGDKRFECAQCQKRFMRSDHLTKHYKTHL 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
oddNP_722922.1 COG5048 <203..334 CDD:227381 44/163 (27%)
C2H2 Zn finger 222..242 CDD:275368 7/21 (33%)
zf-H2C2_2 234..259 CDD:290200 13/26 (50%)
C2H2 Zn finger 250..270 CDD:275368 9/21 (43%)
zf-H2C2_2 262..285 CDD:290200 9/22 (41%)
C2H2 Zn finger 278..298 CDD:275368 7/19 (37%)
zf-C2H2 304..326 CDD:278523
C2H2 Zn finger 306..326 CDD:275368
Sp2NP_084496.2 zf-C2H2 525..549 CDD:278523 7/23 (30%)
C2H2 Zn finger 530..549 CDD:275368 6/18 (33%)
zf-H2C2_2 542..568 CDD:290200 13/25 (52%)
C2H2 Zn finger 557..579 CDD:275368 9/21 (43%)
zf-H2C2_2 571..594 CDD:290200 9/22 (41%)
zf-C2H2 585..607 CDD:278523 8/21 (38%)
C2H2 Zn finger 587..607 CDD:275368 7/19 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2698
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.030

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