DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment odd and Clamp

DIOPT Version :9

Sequence 1:NP_722922.1 Gene:odd / 33583 FlyBaseID:FBgn0002985 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_001014498.1 Gene:Clamp / 35445 FlyBaseID:FBgn0032979 Length:566 Species:Drosophila melanogaster


Alignment Length:375 Identity:98/375 - (26%)
Similarity:133/375 - (35%) Gaps:118/375 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 QQQQQQQQQHRLWL-------QMQQQQQQHQAPQQYPVYPTASADPVAVHQQ--------LMNHW 134
            ||...|||||....       ....||.:.:.|:|........|:..|..||        .|.|.
  Fly   204 QQSVMQQQQHESKASKCINCGSSMLQQSKRKGPKQVRCESCMQAEQTAQQQQQLFVAQDGQMAHP 268

  Fly   135 IRNAAIYQQQQQQQQH----------PHHHHHHGHPHHP-------------------------H 164
            ::..:...|.|.|.|.          |......|..|||                         |
  Fly   269 VQIISTTPQAQAQLQQIVAAQTGGTTPKREASSGSGHHPVKKRNSQQMTKCQKCNGSGVVLVGQH 333

  Fly   165 PHPHH-----------------------VRPYP----AGLHS----------LHA-------AVM 185
            .|..|                       .:|:.    .||.|          ||:       ::.
  Fly   334 SHASHSGVGGSVKQSVTVKTECLSCRNPSKPFSCNICGGLFSRYSSLWSHKKLHSGEKNYKCSIC 398

  Fly   186 GRHFGAMPTLKLGGAGGASGVPSGATGSSRPKKQFICKYCNRQFTKSYNLLIHERTHTDERPYSC 250
            |..|.....||     ..:.:.:|       :|.:.|:.|..||::|.:|..|||||:.||||.|
  Fly   399 GLAFAKAVYLK-----NHARIHTG-------EKPYKCQTCGMQFSQSPHLKNHERTHSGERPYVC 451

  Fly   251 DICGKAFRRQDHLRDHRYIHSKDKPFKCSDCGKGFCQSRTLAVHKVTHLEEGPHKCPICQRSFNQ 315
            .:|.|.|.|...|.:||.||:.:||:||..||..|.|:..|..|...|..|.|:||.||..:|..
  Fly   452 GVCDKGFARHATLWNHRRIHTGEKPYKCEICGSAFSQAAHLKNHAKVHSGEKPYKCEICSAAFAD 516

  Fly   316 RANLKSHLQSHSEQSTKEVVVTTSPATSHS----VPNQALSSPQPENLAQ 361
            |..||.|...|.:..      .|:|..:.|    |..|.:  |..|:.||
  Fly   517 RFALKRHRGIHQKYG------QTAPRQTSSDGMIVHKQEI--PDMEDEAQ 558

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
oddNP_722922.1 COG5048 <203..334 CDD:227381 50/130 (38%)
C2H2 Zn finger 222..242 CDD:275368 9/19 (47%)
zf-H2C2_2 234..259 CDD:290200 14/24 (58%)
C2H2 Zn finger 250..270 CDD:275368 8/19 (42%)
zf-H2C2_2 262..285 CDD:290200 11/22 (50%)
C2H2 Zn finger 278..298 CDD:275368 7/19 (37%)
zf-C2H2 304..326 CDD:278523 9/21 (43%)
C2H2 Zn finger 306..326 CDD:275368 8/19 (42%)
ClampNP_001014498.1 COG5048 <359..498 CDD:227381 47/150 (31%)
C2H2 Zn finger 367..387 CDD:275368 3/19 (16%)
zf-H2C2_2 379..403 CDD:290200 3/23 (13%)
C2H2 Zn finger 395..415 CDD:275368 4/24 (17%)
zf-H2C2_2 407..432 CDD:290200 8/36 (22%)
C2H2 Zn finger 423..443 CDD:275368 9/19 (47%)
zf-H2C2_2 435..460 CDD:290200 14/24 (58%)
C2H2 Zn finger 451..471 CDD:275368 8/19 (42%)
zf-H2C2_2 464..488 CDD:290200 12/23 (52%)
COG5048 475..>529 CDD:227381 23/53 (43%)
C2H2 Zn finger 479..499 CDD:275368 7/19 (37%)
zf-H2C2_2 491..515 CDD:290200 9/23 (39%)
C2H2 Zn finger 507..527 CDD:275368 8/19 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 44 1.000 Inparanoid score I2683
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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