DRSC/TRiP Functional Genomics Resources

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Protein Alignment odd and sna

DIOPT Version :9

Sequence 1:NP_722922.1 Gene:odd / 33583 FlyBaseID:FBgn0002985 Length:392 Species:Drosophila melanogaster
Sequence 2:NP_476732.1 Gene:sna / 34908 FlyBaseID:FBgn0003448 Length:390 Species:Drosophila melanogaster


Alignment Length:380 Identity:88/380 - (23%)
Similarity:136/380 - (35%) Gaps:108/380 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 ELNLSREQDFAEEDFIVIKEERETSLSPMLTPPHTPTE-------EPLRRVHPAISEEAVATQLH 74
            :|:|.|.:|...:|:...:.:|:..|:...||....:.       .|     |..:::.:.|::|
  Fly    43 DLSLKRGRDEETQDYQQPEPKRDYVLNLSKTPERNSSSSSNSCLLSP-----PVEAQDYLPTEIH 102

  Fly    75 MRHM----AHYQQQQQQQQQQQQ------------HRLWLQMQQQQQQHQAPQQYPVYPTASADP 123
            ||.:    ..|...........|            ..||    ...|.|.|  .:|...::.|.|
  Fly   103 MRGLTAGTTGYTTATPTTINPFQSAFVMAAGCNPISALW----SSYQPHLA--AFPSPASSMASP 161

  Fly   124 VAVHQQLMNHWIRNAAIYQQQQQQQQHPHHHHHHGHPHHP--------HPHPHHVR---PYPAGL 177
            .:|:.            |||...             |..|        .|....||   |.||..
  Fly   162 QSVYS------------YQQMTP-------------PSSPGSDLETGSEPEDLSVRNDIPLPALF 201

  Fly   178 H--------SLHAAVMGRH-FGAMPTLKLGGAGGASG--------------VPSGATGSSR---- 215
            |        |..|:|.... :...|.:....|..|:.              :.|.:.|.|:    
  Fly   202 HLFDEAKSSSSGASVSSSSGYSYTPAMSASSASVAANHAKNYRFKCDECQKMYSTSMGLSKHRQF 266

  Fly   216 ---------PKKQFICKYCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHS 271
                     .||...|:.|.:.:|....|.:|.||||  .|..|.||||||.|...|:.|...|:
  Fly   267 HCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHT--LPCKCPICGKAFSRPWLLQGHIRTHT 329

  Fly   272 KDKPFKCSDCGKGFCQSRTLAVHKVTHLEEGPHKCPICQRSFNQRANLKSHLQSH 326
            .:|||:|.||.:.|.....|..|:.||::...:.|.:|.:||::.:.|..|..|:
  Fly   330 GEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSN 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
oddNP_722922.1 COG5048 <203..334 CDD:227381 45/151 (30%)
C2H2 Zn finger 222..242 CDD:275368 6/19 (32%)
zf-H2C2_2 234..259 CDD:290200 14/24 (58%)
C2H2 Zn finger 250..270 CDD:275368 10/19 (53%)
zf-H2C2_2 262..285 CDD:290200 9/22 (41%)
C2H2 Zn finger 278..298 CDD:275368 6/19 (32%)
zf-C2H2 304..326 CDD:278523 6/21 (29%)
C2H2 Zn finger 306..326 CDD:275368 6/19 (32%)
snaNP_476732.1 C2H2 Zn finger 308..328 CDD:275368 10/19 (53%)
zf-H2C2_2 321..344 CDD:290200 9/22 (41%)
zf-C2H2 334..356 CDD:278523 7/21 (33%)
C2H2 Zn finger 336..356 CDD:275368 6/19 (32%)
zf-H2C2_2 348..373 CDD:290200 8/24 (33%)
C2H2 Zn finger 364..380 CDD:275368 5/15 (33%)
C2H2 Zn finger 247..267 CDD:275368 3/19 (16%)
C2H2 Zn finger 282..302 CDD:275368 6/19 (32%)
zf-C2H2 306..328 CDD:278523 10/21 (48%)
COG5048 307..>356 CDD:227381 20/48 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 54 1.000 Inparanoid score I1809
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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