DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sob and Patz1

DIOPT Version :9

Sequence 1:NP_476882.1 Gene:sob / 33581 FlyBaseID:FBgn0004892 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_062520.1 Gene:Patz1 / 56218 MGIID:1891832 Length:641 Species:Mus musculus


Alignment Length:520 Identity:130/520 - (25%)
Similarity:195/520 - (37%) Gaps:118/520 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 PANSAAAAALNLQALESYLALQ------RLTGKSDVFRFSNSNTGSSNSNNATTCNSSSSEADNN 207
            ||:.|..||.: :..||..:.|      ...|.:||...:.:..|.:..:.....::.||:...:
Mouse    53 PAHRAVLAACS-EYFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGD 116

  Fly   208 AL---------------PSLIDIAN-------IELKSSCSSSSSGEPPLTAATASAAATSSPSSN 250
            .|               |.|:..|.       ||:.......|:.:..:..|.|.......|.::
Mouse   117 ILDFAYTSRIVVRLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTS 181

  Fly   251 NSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAELAAECDLPLLDGEDA 315
            :            :..|...|..||:||.:...|.:...:.....||.|.:|.:..||:|.|.|.
Mouse   182 D------------LGFPLDMTNGAAMAANSNGIAGSMQPEEEAARATGAAIAGQASLPVLPGVDR 234

  Fly   316 LSFEAGDLDSSYGSFMFNPSAFSQAETDSALHSLQATMYQDKMSVISGAAGGVGAGAVGGLEEAG 380
            |...||.|.....:..| |:..|.|   ..|.|.:......|.:::...     .|:.|||.|||
Mouse   235 LPMVAGPLSPQLLTSPF-PNVASSA---PPLTSKRGRGRPRKANLLDSM-----FGSPGGLREAG 290

  Fly   381 SSAAAAAAQ--------------------------------------------------RSKKQF 395
            ........:                                                  |::||.
Mouse   291 ILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQV 355

  Fly   396 ICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIH--SKEKPFKCAECGK 458
            .|:.|.:.|...|:|..|:.:|:.|:||||.:||..|:|:|.:..|...|  |..||:.|..|||
Mouse   356 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGK 420

  Fly   459 GFCQSRTLAVH-KILHMEESPHKCPVCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNC-- 520
            ||.:...|..| |.:|..|.||||..||.||..|..|::||..|.|..|  |..|||..|...  
Mouse   421 GFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVP--CQVCGKYLRAAYMA 483

  Fly   521 -DLRRHSLTHNLSAGVGGVVGGNL--------SDPFGSGSSSSSELGLPTGSASTAASSRDLVAV 576
             .|::||...:....:....|...        ||.:|. .|.:|:|..|...::..:.|.| |||
Mouse   484 DHLKKHSEGPSNFCSICNREGQKCSHQDLIESSDSYGD-LSDASDLKTPEKQSANGSFSCD-VAV 546

  Fly   577  576
            Mouse   547  546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sobNP_476882.1 COG5048 <389..529 CDD:227381 59/195 (30%)
C2H2 Zn finger 397..417 CDD:275368 6/19 (32%)
zf-H2C2_2 409..434 CDD:290200 11/24 (46%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
zf-H2C2_2 437..460 CDD:290200 9/24 (38%)
C2H2 Zn finger 453..473 CDD:275368 9/20 (45%)
zf-C2H2 479..501 CDD:278523 11/21 (52%)
C2H2 Zn finger 481..501 CDD:275368 9/19 (47%)
zf-H2C2_2 493..518 CDD:290200 10/24 (42%)
C2H2 Zn finger 509..529 CDD:275368 8/22 (36%)
Patz1NP_062520.1 BTB 30..159 CDD:306997 20/106 (19%)
C2H2 Zn finger 294..314 CDD:275368 0/19 (0%)
SFP1 <329..406 CDD:227516 21/76 (28%)
C2H2 Zn finger 357..377 CDD:275368 6/19 (32%)
zf-H2C2_2 369..394 CDD:316026 11/24 (46%)
SFP1 <379..436 CDD:227516 24/56 (43%)
C2H2 Zn finger 385..405 CDD:275368 7/19 (37%)
C2H2 Zn finger 415..433 CDD:275368 8/17 (47%)
zf-C2H2_6 442..467 CDD:316434 12/24 (50%)
C2H2 Zn finger 444..464 CDD:275368 9/19 (47%)
C2H2 Zn finger 470..489 CDD:275368 6/18 (33%)
zf-C2H2_assoc3 492..558 CDD:318778 13/57 (23%)
C2H2 Zn finger 561..582 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 129 1.000 Inparanoid score I4627
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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