DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sob and rn

DIOPT Version :9

Sequence 1:NP_476882.1 Gene:sob / 33581 FlyBaseID:FBgn0004892 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_001262343.1 Gene:rn / 40879 FlyBaseID:FBgn0267337 Length:952 Species:Drosophila melanogaster


Alignment Length:635 Identity:149/635 - (23%)
Similarity:227/635 - (35%) Gaps:187/635 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 TSKHHSNNNHK--------PS------------AAATATAAHKKSESCNSNGNKCTAATSPI--- 101
            ::.|:|::.|.        ||            ..||.|........||.........:.|:   
  Fly    19 SNPHNSSHGHSDYHQFRSYPSFVVTPYHDGHVQGPATPTPCTAPPTPCNGPVPVSVPVSIPVCHT 83

  Fly   102 GSKTSNAAMAAATATAAAATNDLAAAAAVVLSLQGTMVSSLQQAALLPANSAAAAALNLQALESY 166
            |.:.|...:.::.|.|||     |||||..:::.|:..:.|..:..:..........:|.|:...
  Fly    84 GGQGSPVIVESSFAIAAA-----AAAAAAAVAVGGSSATPLLPSPPIKIEQVFGEPSSLGAVVED 143

  Fly   167 LALQRLTGKSDVFRFSNSNTG---SSNSNNATTCNSSSSEADNNALP----------------SL 212
            .||.........||..::|.|   |:.:||....:||:...:|:...                |.
  Fly   144 YALGLDCPVEHTFRKPHNNNGYSWSTGNNNEVVSHSSNGHTNNHPTTPPTPPNEASATQATSVSA 208

  Fly   213 IDIANIELKSSCSSS--SSGEPPLTAATASAAATSSPSSNNSNSTSTPTT-SKCVPLPSIGTVSA 274
            |::...:..|...|:  ||.:.|.:...|..|||.....|||....||.: |...|..::.:.|.
  Fly   209 INLNQAQPASQTRSNFGSSIKSPPSEPDAVTAATCKSQENNSGQNPTPNSLSDHNPAHNLNSNST 273

  Fly   275 AVAAAAAAAAAAASQQAALDCATAAELAAECDLPL--LDGED----------ALSFE-------- 319
            |.|.|||||||||:                 ::|:  :.|::          |:..|        
  Fly   274 AAAVAAAAAAAAAA-----------------NMPIGGVQGQNPTQGLVHWMSAVMAEHMTGQTHH 321

  Fly   320 -----------AGDLD-----SSYGSFMFNPSAFSQAETDSALHSLQATMYQDKMS--------- 359
                       .|::|     |.|..:...|.:...|.....:...|.  |:.||:         
  Fly   322 DPGAVGMHYMWNGNVDHAKDISDYNLWPPTPRSHQHASEHHPMSLKQE--YEAKMNDHHHNNLQK 384

  Fly   360 -------------------VISGAAGGVGAGAVGGLEEAGSS--------------------AAA 385
                               :..||:.|||.|. ||....|:|                    |||
  Fly   385 GHFLDDNRLEHHAVTGQGGLGLGASNGVGGGG-GGASVVGNSSLGASSHHAVAAAHHHNQAVAAA 448

  Fly   386 AAAQ------------------------------RSKKQFICKFCNRQFTKSYNLLIHERTHTDE 420
            :||.                              .|.:::.||.|.:.|:...:|.:|.:.|..|
  Fly   449 SAAALLVVPQPINASKMGGPGGVSSVAGGHATGGGSGRKYQCKMCPQIFSSKADLQLHTQIHMRE 513

  Fly   421 -RPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILHMEESPHKC--P 482
             :||.|..|.|||....:|..|..||...||::|..|.:.|.|...|..|...|..:.|:||  |
  Fly   514 AKPYKCTQCSKAFANSSYLSQHTRIHLGIKPYRCEICQRKFTQLSHLQQHIRTHTGDKPYKCRHP 578

  Fly   483 VCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNCDLRRHSLTHNLS 532
            .|.::|:|.|||::|...|...||:.|.||.|.|.....|..|...|..|
  Fly   579 GCQKAFSQLSNLQSHSRCHQTDKPFKCNSCYKCFSDEPSLLEHIPKHKES 628

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sobNP_476882.1 COG5048 <389..529 CDD:227381 50/172 (29%)
C2H2 Zn finger 397..417 CDD:275368 6/19 (32%)
zf-H2C2_2 409..434 CDD:290200 11/25 (44%)
C2H2 Zn finger 425..445 CDD:275368 7/19 (37%)
zf-H2C2_2 437..460 CDD:290200 8/22 (36%)
C2H2 Zn finger 453..473 CDD:275368 6/19 (32%)
zf-C2H2 479..501 CDD:278523 10/23 (43%)
C2H2 Zn finger 481..501 CDD:275368 9/21 (43%)
zf-H2C2_2 493..518 CDD:290200 11/24 (46%)
C2H2 Zn finger 509..529 CDD:275368 7/19 (37%)
rnNP_001262343.1 C2H2 Zn finger 490..510 CDD:275368 6/19 (32%)
C2H2 Zn finger 519..539 CDD:275368 7/19 (37%)
zf-H2C2_2 531..556 CDD:290200 9/24 (38%)
zf-C2H2 545..567 CDD:278523 6/21 (29%)
C2H2 Zn finger 547..567 CDD:275368 6/19 (32%)
zf-C2H2_8 550..630 CDD:292531 29/79 (37%)
zf-H2C2_2 559..586 CDD:290200 9/26 (35%)
C2H2 Zn finger 575..597 CDD:275368 9/21 (43%)
C2H2 Zn finger 605..625 CDD:275368 7/19 (37%)
C2H2 Zn finger 636..656 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 72 1.000 Inparanoid score I3889
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.050

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