DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sob and odd

DIOPT Version :9

Sequence 1:NP_476882.1 Gene:sob / 33581 FlyBaseID:FBgn0004892 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_722922.1 Gene:odd / 33583 FlyBaseID:FBgn0002985 Length:392 Species:Drosophila melanogaster


Alignment Length:225 Identity:124/225 - (55%)
Similarity:145/225 - (64%) Gaps:35/225 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   344 SALHSLQATMYQDKMSVISGAAGGVGAGAVGGLEEAGSSAAAAAAQRSKKQFICKFCNRQFTKSY 408
            :.||||.|.:    |....||...:..|..||  .:|..:.|..:.|.|||||||:|||||||||
  Fly   175 AGLHSLHAAV----MGRHFGAMPTLKLGGAGG--ASGVPSGATGSSRPKKQFICKYCNRQFTKSY 233

  Fly   409 NLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILH 473
            |||||||||||||||||||||||||||||||||||||||:|||||::|||||||||||||||:.|
  Fly   234 NLLIHERTHTDERPYSCDICGKAFRRQDHLRDHRYIHSKDKPFKCSDCGKGFCQSRTLAVHKVTH 298

  Fly   474 MEESPHKCPVCNRSFNQRSNLKTHLLTHTDIKPYNCASCGKVFRRNCDLRRHSLTHNLSAGVGGV 538
            :||.|||||:|.||||||:|||:||.:|::      .|..:|.........||:.:..       
  Fly   299 LEEGPHKCPICQRSFNQRANLKSHLQSHSE------QSTKEVVVTTSPATSHSVPNQA------- 350

  Fly   539 VGGNLSDPFG------------SGSSSSSE 556
                ||.|..            |.||||||
  Fly   351 ----LSSPQPENLAQHLPVLDLSSSSSSSE 376

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sobNP_476882.1 COG5048 <389..529 CDD:227381 101/139 (73%)
C2H2 Zn finger 397..417 CDD:275368 18/19 (95%)
zf-H2C2_2 409..434 CDD:290200 24/24 (100%)
C2H2 Zn finger 425..445 CDD:275368 19/19 (100%)
zf-H2C2_2 437..460 CDD:290200 19/22 (86%)
C2H2 Zn finger 453..473 CDD:275368 16/19 (84%)
zf-C2H2 479..501 CDD:278523 16/21 (76%)
C2H2 Zn finger 481..501 CDD:275368 14/19 (74%)
zf-H2C2_2 493..518 CDD:290200 8/24 (33%)
C2H2 Zn finger 509..529 CDD:275368 4/19 (21%)
oddNP_722922.1 COG5048 <203..334 CDD:227381 100/136 (74%)
C2H2 Zn finger 222..242 CDD:275368 18/19 (95%)
zf-H2C2_2 234..259 CDD:290200 24/24 (100%)
C2H2 Zn finger 250..270 CDD:275368 19/19 (100%)
zf-H2C2_2 262..285 CDD:290200 19/22 (86%)
C2H2 Zn finger 278..298 CDD:275368 16/19 (84%)
zf-C2H2 304..326 CDD:278523 16/21 (76%)
C2H2 Zn finger 306..326 CDD:275368 14/19 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 53 1.000 Domainoid score I11342
eggNOG 1 0.900 - - E33208_3B9IA
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D18266at7147
OrthoFinder 1 1.000 - - FOG0000748
OrthoInspector 1 1.000 - - mtm6437
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR14196
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1664
87.920

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