DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sob and klf-1

DIOPT Version :9

Sequence 1:NP_476882.1 Gene:sob / 33581 FlyBaseID:FBgn0004892 Length:578 Species:Drosophila melanogaster
Sequence 2:NP_497632.1 Gene:klf-1 / 175404 WormBaseID:WBGene00018990 Length:497 Species:Caenorhabditis elegans


Alignment Length:498 Identity:109/498 - (21%)
Similarity:181/498 - (36%) Gaps:143/498 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 SDIAEALGELKASA------------TAAASSASKAATSKHHSN--------NNH--------KP 71
            |:...|...|||:|            :.||:|:|.::..:..|:        |:|        :|
 Worm    83 SESTSAYERLKANALRRKLENTFGNDSGAATSSSSSSVFERQSDFSAFAPYKNSHFDSTQSLFQP 147

  Fly    72 SAA---------ATATAAHKKSESCNSNGNKCTAATSPIGSKTSNAAMAAATATAAAATNDLAAA 127
            :.:         :...|.|:||.|..|            |..|...|:.||              
 Worm   148 TTSFNDRLEQIKSDFIAEHQKSMSSFS------------GFNTPTTALGAA-------------- 186

  Fly   128 AAVVLSLQGTMVSSLQQAALL---------PANSAAAAALNLQALESYLALQRLTGKSDVFRFSN 183
                  .||..|.....|.:|         |.....:..||...|.....|.....::...|..:
 Worm   187 ------FQGMQVKKSAFAPVLLRENLDTRRPGGHLISDILNRDPLPQSRNLNLNMARNVPIRLIH 245

  Fly   184 SNTGSSNSNNATTCNSSSSEADNNALPSLIDIANIE------LKSSCSSSSSGEPPLTAATASAA 242
            |   :||.:.|::.:..|...|:.::  :::.|:::      :|.|..:....:.|||....|.:
 Worm   246 S---TSNFDIASSSSGDSGHQDHESI--VVEDADMDSPTSPCVKRSAMNFDLRDEPLTVNVESVS 305

  Fly   243 ATSSPSSNNSNSTSTPTTSKCVPLPSIGTVSAAVAAAAAAAAAAASQQAALDCATAAELAAECDL 307
            :||...|:.|:|.::.......||.....:....|:|..|....|:.|       ...:|.:..|
 Worm   306 STSDLPSSVSSSVNSFVYQNFDPLEFKRKIDELTASACLAVMPDANGQ-------VDPMAIKTQL 363

  Fly   308 PLLDGEDALSFEAGDLDSSYGSFMFNPSAFSQAETDSALH---SLQATMYQDKMSVISGAAGGVG 369
                  ||:..:..:..:            ..||....||   ||:.:                 
 Worm   364 ------DAIKKQMEEHQT------------HMAEASQRLHVDSSLEDS----------------- 393

  Fly   370 AGAVGGLEEAGSSAAAAAAQRSKKQFICKF--CNRQFTKSYNLLIHERTHTDERPYSC--DICGK 430
                 ..|.:.||:..|:....|:...|..  |.:.:|||.:|..|.||||.|:||.|  |.|..
 Worm   394 -----NCEPSPSSSYDASEPSVKRLHHCTHPNCGKVYTKSSHLKAHFRTHTGEKPYECSWDGCDW 453

  Fly   431 AFRRQDHLRDHRYIHSKEKPFKCAECGKGFCQSRTLAVHKILH 473
            .|.|.|.|..|...|:.::||||::|.:.|.:|..|::|...|
 Worm   454 RFARSDELTRHYRKHTGDRPFKCSQCSRAFSRSDHLSLHMKRH 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sobNP_476882.1 COG5048 <389..529 CDD:227381 34/89 (38%)
C2H2 Zn finger 397..417 CDD:275368 8/21 (38%)
zf-H2C2_2 409..434 CDD:290200 13/26 (50%)
C2H2 Zn finger 425..445 CDD:275368 8/21 (38%)
zf-H2C2_2 437..460 CDD:290200 8/22 (36%)
C2H2 Zn finger 453..473 CDD:275368 6/19 (32%)
zf-C2H2 479..501 CDD:278523
C2H2 Zn finger 481..501 CDD:275368
zf-H2C2_2 493..518 CDD:290200
C2H2 Zn finger 509..529 CDD:275368
klf-1NP_497632.1 COG5048 398..>481 CDD:227381 32/82 (39%)
C2H2 Zn finger 419..438 CDD:275368 7/18 (39%)
zf-H2C2_2 430..457 CDD:290200 13/26 (50%)
C2H2 Zn finger 446..468 CDD:275368 8/21 (38%)
zf-H2C2_2 460..485 CDD:290200 9/24 (38%)
C2H2 Zn finger 476..496 CDD:275368 6/19 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 72 1.000 Inparanoid score I3889
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.050

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