DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8852 and Lrrc4b

DIOPT Version :10

Sequence 1:NP_608790.2 Gene:CG8852 / 33577 FlyBaseID:FBgn0031548 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001258010.1 Gene:Lrrc4b / 308571 RGDID:1307121 Length:709 Species:Rattus norvegicus


Alignment Length:598 Identity:132/598 - (22%)
Similarity:194/598 - (32%) Gaps:209/598 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 ALIPNLTAVSFRY-----NELGTLSGETIQDLPHLKILHLQQNSLRYLEY--FKEHSDLEELLIQ 201
            |.:|....|:.||     |.:..:..:|.:.|.||:||.|.:|.:|.:|.  |.....|..|.:.
  Rat    80 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELF 144

  Fly   202 DE----------------RDLVLRFNEI-------LNQLPELRRLSLRNVEKIEDQFLRILPENL 243
            |.                |:|.||.|.|       .|::|.||||.|..::::|           
  Rat   145 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE----------- 198

  Fly   244 TDLIIENTPIQPGVLYLTEGVAK-LVNVTITN---CQLKGFALQPAHNLDIMYLNLSGNAISSLN 304
                           |::|...: |||:...|   |.||          ||..|    .|:..|.
  Rat   199 ---------------YISEAAFEGLVNLRYLNLGMCNLK----------DIPNL----TALVRLE 234

  Fly   305 ISFESGPSTLLTLDLSRNRLEHLNFTWFYRTTSLRSLHLQENHFHSLSLFQLGFISSASIHHIDL 369
                       .|:||.|||:.:....|...||||.|.|.  |....::.:..|....|:..::|
  Rat   235 -----------ELELSGNRLDLIRPGSFQGLTSLRKLWLM--HAQVATIERNAFDDLKSLEELNL 286

  Fly   370 RSNELMSFRDTENADLPSWNPQL-RISIDDNPWSC-------QWMLNFS-----------HMQPQ 415
            ..|.|||...    ||.:...:| |:.::.|||.|       .|.|..:           |....
  Rat   287 SHNNLMSLPH----DLFTPLHRLERVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCHAPAG 347

  Fly   416 LFRLFQYSKYISHININGLSCTPQEPPSEEPPKVRRIMHVRINGTDSSIPVPHPHGNVSSFTVLY 480
            |     ..:||..::.:..:|  ..|...|||            ||              ..|..
  Rat   348 L-----KGRYIGELDQSHFTC--YAPVIVEPP------------TD--------------LNVTE 379

  Fly   481 GNPVELHRSQRSLALIIVFMLPLGIAFLFLLLYLYLHCERLFHLSYYASGLPCF----------- 534
            |...||.....:....:.::.|.|.        |..|......:|....|...|           
  Rat   380 GMAAELKCRTGTSMTSVNWLTPNGT--------LMTHGSYRVRISVLHDGTLNFTNVTVQDTGQY 436

  Fly   535 -------GGEKSSSGPRFVDHVDIVRYPIANGGSS-------------------CPVDVET---- 569
                   .|..::|....|..||    |:|.||..                   ..|.|||    
  Rat   437 TCMVTNSAGNTTASATLNVSAVD----PVAAGGPGGGGPGGGGGAGGAGGYTYFTTVTVETLETQ 497

  Fly   570 -----ELPDGYETPVSGGTSICNCTGHR-----ESTCSRTHHVTYESLPAELPYQL-YAEIKEQA 623
                 :.|.|.|....|.|:.....|.|     .::.|.|......|.|.|..:.: ..::.|.|
  Rat   498 PGEEAQQPRGTEKEPPGPTTDGAWGGGRPDAAAPASASTTAPAPRSSRPTEKAFTVPITDVTENA 562

  Fly   624 DENGDADEVLAVT 636
            .:  |.|:|:..|
  Rat   563 LK--DLDDVMKTT 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8852NP_608790.2 LRR <122..452 CDD:443914 88/360 (24%)
leucine-rich repeat 149..172 CDD:275380 6/27 (22%)
leucine-rich repeat 173..194 CDD:275380 8/22 (36%)
leucine-rich repeat 220..242 CDD:275380 6/21 (29%)
leucine-rich repeat 243..266 CDD:275380 2/22 (9%)
leucine-rich repeat 267..287 CDD:275380 7/22 (32%)
leucine-rich repeat 288..313 CDD:275380 5/24 (21%)
leucine-rich repeat 314..337 CDD:275380 7/22 (32%)
leucine-rich repeat 364..387 CDD:275378 7/22 (32%)
leucine-rich repeat 392..403 CDD:275378 5/11 (45%)
Lrrc4bNP_001258010.1 LRRNT 59..92 CDD:214470 3/11 (27%)
LRR <89..>314 CDD:443914 70/281 (25%)
LRR 1 89..110 4/20 (20%)
leucine-rich repeat 90..113 CDD:275380 5/22 (23%)
LRR 2 113..134 9/20 (45%)
leucine-rich repeat 114..137 CDD:275380 8/22 (36%)
LRR 3 137..158 3/20 (15%)
leucine-rich repeat 138..161 CDD:275380 3/22 (14%)
LRR 4 161..182 6/20 (30%)
leucine-rich repeat 162..185 CDD:275380 7/22 (32%)
LRR 5 185..207 8/47 (17%)
leucine-rich repeat 186..210 CDD:275380 9/49 (18%)
LRR 6 210..231 9/34 (26%)
leucine-rich repeat 211..232 CDD:275380 8/34 (24%)
LRR 7 232..253 8/31 (26%)
leucine-rich repeat 233..256 CDD:275380 8/33 (24%)
LRR 8 256..277 7/22 (32%)
leucine-rich repeat 257..280 CDD:275380 6/24 (25%)
LRR 9 280..301 8/24 (33%)
leucine-rich repeat 281..302 CDD:275380 7/24 (29%)
LRRCT 313..363 CDD:214507 10/54 (19%)
I-set 366..455 CDD:400151 19/122 (16%)
Ig strand B 383..387 CDD:409353 2/3 (67%)
Ig strand C 395..399 CDD:409353 0/3 (0%)
Ig strand E 421..425 CDD:409353 1/3 (33%)
Ig strand F 435..440 CDD:409353 0/4 (0%)
Ig strand G 448..451 CDD:409353 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..552 12/55 (22%)

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