DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8852 and Lrrc4b

DIOPT Version :10

Sequence 1:NP_608790.2 Gene:CG8852 / 33577 FlyBaseID:FBgn0031548 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_937893.1 Gene:Lrrc4b / 272381 MGIID:3027390 Length:709 Species:Mus musculus


Alignment Length:602 Identity:130/602 - (21%)
Similarity:191/602 - (31%) Gaps:217/602 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   144 ALIPNLTAVSFRY-----NELGTLSGETIQDLPHLKILHLQQNSLRYLEY--FKEHSDLEELLIQ 201
            |.:|....|:.||     |.:..:..:|.:.|.||:||.|.:|.:|.:|.  |.....|..|.:.
Mouse    80 AEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELF 144

  Fly   202 DE----------------RDLVLRFNEI-------LNQLPELRRLSLRNVEKIEDQFLRILPENL 243
            |.                |:|.||.|.|       .|::|.||||.|..::::|           
Mouse   145 DNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE----------- 198

  Fly   244 TDLIIENTPIQPGVLYLTEGVAK-LVNVTITN---CQLKGFALQPAHNLDIMYLNLSGNAISSLN 304
                           |::|...: |||:...|   |.||          ||..|    .|:..|.
Mouse   199 ---------------YISEAAFEGLVNLRYLNLGMCNLK----------DIPNL----TALVRLE 234

  Fly   305 ISFESGPSTLLTLDLSRNRLEHLNFTWFYRTTSLRSLHLQENHFHSLSLFQLGFISSASIHHIDL 369
                       .|:||.|||:.:....|...||||.|.|.  |....::.:..|....|:..::|
Mouse   235 -----------ELELSGNRLDLIRPGSFQGLTSLRKLWLM--HAQVATIERNAFDDLKSLEELNL 286

  Fly   370 RSNELMS-----FRDTENADLPSWNPQLRISIDDNPWSC-------QWMLNFS-----------H 411
            ..|.|||     |......:        |:.::.|||.|       .|.|..:           |
Mouse   287 SHNNLMSLPHDLFTPLHRLE--------RVHLNHNPWHCNCDVLWLSWWLKETVPSNTTCCARCH 343

  Fly   412 MQPQLFRLFQYSKYISHININGLSCTPQEPPSEEPPKVRRIMHVRINGTDSSIPVPHPHGNVSSF 476
            ....|     ..:||..::.:..:|  ..|...|||            ||              .
Mouse   344 APAGL-----KGRYIGELDQSHFTC--YAPVIVEPP------------TD--------------L 375

  Fly   477 TVLYGNPVELHRSQRSLALIIVFMLPLGIAFLFLLLYLYLHCERLFHLSYYASGLPCF------- 534
            .|..|...||.....:....:.::.|.|.        |..|......:|....|...|       
Mouse   376 NVTEGMAAELKCRTGTSMTSVNWLTPNGT--------LMTHGSYRVRISVLHDGTLNFTNVTVQD 432

  Fly   535 -----------GGEKSSSGPRFVDHVDIVRYPIANGGSS-------------------CPVDVET 569
                       .|..::|....|..||    |:|.||..                   ..|.|||
Mouse   433 TGQYTCMVTNSAGNTTASATLNVSAVD----PVAAGGPGGGGPGGGGGAGGAGGYTYFTTVTVET 493

  Fly   570 ---------ELPDGYETPVSGGTSICNCTGHR-----ESTCSRTHHVTYESLPAELPYQL-YAEI 619
                     :.|.|.|....|.|:.....|.|     .::.|.|......|.|.|..:.: ..::
Mouse   494 LETQPGEEAQQPRGTEKEPPGPTTDGAWGGGRPDAAAPASASTTAPAPRSSRPTEKAFTVPITDV 558

  Fly   620 KEQADENGDADEVLAVT 636
            .|.|.:  |.|:|:..|
Mouse   559 TENALK--DLDDVMKTT 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8852NP_608790.2 LRR <122..452 CDD:443914 86/364 (24%)
leucine-rich repeat 149..172 CDD:275380 6/27 (22%)
leucine-rich repeat 173..194 CDD:275380 8/22 (36%)
leucine-rich repeat 220..242 CDD:275380 6/21 (29%)
leucine-rich repeat 243..266 CDD:275380 2/22 (9%)
leucine-rich repeat 267..287 CDD:275380 7/22 (32%)
leucine-rich repeat 288..313 CDD:275380 5/24 (21%)
leucine-rich repeat 314..337 CDD:275380 7/22 (32%)
leucine-rich repeat 364..387 CDD:275378 6/27 (22%)
leucine-rich repeat 392..403 CDD:275378 4/10 (40%)
Lrrc4bNP_937893.1 LRRNT 59..92 CDD:214470 3/11 (27%)
LRR <89..>314 CDD:443914 68/285 (24%)
LRR 1 89..110 4/20 (20%)
leucine-rich repeat 90..113 CDD:275380 5/22 (23%)
LRR 2 113..134 9/20 (45%)
leucine-rich repeat 114..137 CDD:275380 8/22 (36%)
LRR 3 137..158 3/20 (15%)
leucine-rich repeat 138..161 CDD:275380 3/22 (14%)
LRR 4 161..182 6/20 (30%)
leucine-rich repeat 162..185 CDD:275380 7/22 (32%)
LRR 5 185..207 8/47 (17%)
leucine-rich repeat 186..210 CDD:275380 9/49 (18%)
LRR 6 210..231 9/34 (26%)
leucine-rich repeat 211..232 CDD:275380 8/34 (24%)
LRR 7 232..253 8/31 (26%)
leucine-rich repeat 233..256 CDD:275380 8/33 (24%)
LRR 8 256..277 7/22 (32%)
leucine-rich repeat 257..280 CDD:275380 6/24 (25%)
LRR 9 280..301 7/20 (35%)
leucine-rich repeat 281..302 CDD:275380 6/20 (30%)
LRRCT 313..363 CDD:214507 10/54 (19%)
I-set 366..455 CDD:400151 19/122 (16%)
Ig strand B 383..387 CDD:409353 2/3 (67%)
Ig strand C 395..399 CDD:409353 0/3 (0%)
Ig strand E 421..425 CDD:409353 1/3 (33%)
Ig strand F 435..440 CDD:409353 0/4 (0%)
Ig strand G 448..451 CDD:409353 0/2 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 496..552 12/55 (22%)

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