DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG8852 and lrrtm2

DIOPT Version :10

Sequence 1:NP_608790.2 Gene:CG8852 / 33577 FlyBaseID:FBgn0031548 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_001338621.1 Gene:lrrtm2 / 100538061 ZFINID:ZDB-GENE-080327-8 Length:542 Species:Danio rerio


Alignment Length:563 Identity:110/563 - (19%)
Similarity:195/563 - (34%) Gaps:177/563 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 GALIPNLTAVSFRYNELGTLSGETIQDLPHLKILHLQQNSLRYLEYFKEHSDLEELLIQDERDLV 207
            |||     .:|.|:|.:..||.:.......|..|||..|.:..:     |.|..:.|.: .:||.
Zfish    62 GAL-----GLSLRHNSISELSSDQFFGFTQLTWLHLDHNQITTV-----HEDAFQGLYK-LKDLN 115

  Fly   208 LRFNEILNQLPELRRLSLRNVEKIEDQFLRILPENLTDLIIENTPIQPGVLYLTEGVAKLVNVTI 272
            |..|.| .:||....:.|.|::.::..|.::            |.::|.:.:   |:.||..:.:
Zfish   116 LSSNRI-TKLPNTTFIHLINLQILDLSFNQM------------TALEPELFH---GLRKLQILHL 164

  Fly   273 TNCQLKGF---ALQPAHNLDIMYLNLSGNAISSLNISFESGPSTLLTLDLSRNRLEHLNFTWFYR 334
            .:..|:..   |.....:|:  ||.||.|.:.||..:..:|...|..|.|..|.|..:|...|.|
Zfish   165 RSNSLRTTPVRAFWDCRSLE--YLGLSNNRLRSLARNGFAGLIKLRELHLEHNHLTKINLAHFPR 227

  Fly   335 TTSLRSLHLQENHFHSL-SLFQLGFISSASIHHIDLRSNEL-----------------------M 375
            ..:|:.|:||.|..::| |..:..:   .::..:||..||:                       :
Zfish   228 LVALQFLYLQWNKINNLTSTMEWKW---TTLEKLDLTGNEIRVLIPEVFETLPSLKILLLDNNKL 289

  Fly   376 SFRDTENADLPSWNPQLRISIDDNPWSC--------QWMLNF----SH----MQPQL-------- 416
            |..|::..|:  |.....|.:..|.|.|        .|:..|    .|    ..|:.        
Zfish   290 SNLDSQTMDM--WKSLNVIGLSSNLWECTKRICNLATWLSTFKGRWEHSILCYSPEYAQGEEILD 352

  Fly   417 ----FRLFQ-YSKYISHININGLSCTP----------QEPPSE-------------------EPP 447
                |:|.| :|..:...:.:..:..|          |.|..:                   :||
Zfish   353 AVYGFQLCQNFSAPVVLTSTSTEAMLPDITSSLFGNMQTPTQDFYAEDFGSFTIVTTTTTTTQPP 417

  Fly   448 KVRRIMHVRINGTDSSIPVPHPHGNVSSFTVLYGNPVELHRSQRSLALIIVFMLPLGIAFLFLLL 512
            :......:.:.|.|.:.........:.:..|:.|          ::||:..|.|      :..::
Zfish   418 RTALATTMTVEGADVTEDYSAMDNTLLTQRVIIG----------TMALLFSFFL------IIFVV 466

  Fly   513 YLYLHC-----ERLFHLSYYASGLPCFGGEKSSSGPRFVDHVDIVRYPIANGGSSCPVDVETELP 572
            |:...|     .|:.|.|       .....:.....:        |.|:|        |:.|::|
Zfish   467 YISRKCCPPTLRRIRHCS-------AIQNRRQMRTQQ--------RQPMA--------DLATQVP 508

  Fly   573 -DGYETPVSGGTSICNCTGHRESTCSRTHHVTYESLPAELPYQ 614
             :.|||....|..:. ..|:.:..|.            :|||:
Zfish   509 YNEYETSHEEGALVI-INGYGQCKCQ------------QLPYK 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8852NP_608790.2 LRR <122..452 CDD:443914 82/393 (21%)
leucine-rich repeat 149..172 CDD:275380 5/22 (23%)
leucine-rich repeat 173..194 CDD:275380 6/20 (30%)
leucine-rich repeat 220..242 CDD:275380 3/21 (14%)
leucine-rich repeat 243..266 CDD:275380 3/22 (14%)
leucine-rich repeat 267..287 CDD:275380 3/22 (14%)
leucine-rich repeat 288..313 CDD:275380 9/24 (38%)
leucine-rich repeat 314..337 CDD:275380 8/22 (36%)
leucine-rich repeat 364..387 CDD:275378 7/45 (16%)
leucine-rich repeat 392..403 CDD:275378 3/10 (30%)
lrrtm2NP_001338621.1 LRRNT 34..>59 CDD:214470
LRR <66..349 CDD:443914 70/311 (23%)
leucine-rich repeat 66..86 CDD:275380 5/19 (26%)
leucine-rich repeat 87..110 CDD:275380 8/27 (30%)
leucine-rich repeat 111..134 CDD:275380 8/23 (35%)
leucine-rich repeat 135..158 CDD:275380 4/37 (11%)
leucine-rich repeat 159..182 CDD:275380 3/22 (14%)
leucine-rich repeat 183..206 CDD:275380 9/24 (38%)
leucine-rich repeat 207..230 CDD:275380 8/22 (36%)
leucine-rich repeat 231..254 CDD:275380 7/25 (28%)
leucine-rich repeat 255..278 CDD:275380 4/22 (18%)
Blue background indicates that the domain is not in the aligned region.

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