DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sr-CIV and mep1a.1

DIOPT Version :9

Sequence 1:NP_608789.1 Gene:Sr-CIV / 33576 FlyBaseID:FBgn0031547 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001025452.1 Gene:mep1a.1 / 553530 ZFINID:ZDB-GENE-041001-209 Length:598 Species:Danio rerio


Alignment Length:261 Identity:55/261 - (21%)
Similarity:84/261 - (32%) Gaps:88/261 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 SCALRRQTIDVSCDFESEDMCGWTAELSFLGTWKRVSTVADFHSEKTGPQKDHTFQNQ--SIGHY 182
            :|:.....:| .|.||..::||.....:..|.|..:.:           .:|||...|  .:|:.
Zfish   250 NCSSSLTLLD-QCAFEKINICGMVQSSTDDGDWVHLKS-----------SEDHTLSGQCRDLGYT 302

  Fly   183 VRMETESDAFGTYHFLSP--LYPKELSLSGACFQFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTN 245
            :..:|.|........:..  ||||.   ...|.||.|.|.||....|::                
Zfish   303 MHFDTSSGQAERSALIESRILYPKR---KLQCLQFFYKMTGSAKDRLVI---------------- 348

  Fly   246 HPYKFDQFVMTGSQGARWLEHTIDINKM--------DED---------------FQVIFTAT--D 285
                          .||..:.|.::.|:        |||               |:..|.|.  |
Zfish   349 --------------WARMDDGTGEVRKLKKLQTIWADEDKTWKIAHVPMQVGAKFRYAFQAVKGD 399

  Fly   286 ARSQYGDIAIDDVKLMAAKECARRSTFIEEPKKPIEESDITDSL-------------GYQMTDCS 337
            :.|..|.|.|||:.| ....|......|:.....:|::|.:..|             |.|:...|
Zfish   400 SSSSGGGIFIDDISL-TETHCPAAVWRIQNFSSILEKADYSTVLNSPRFYSPEGYGFGIQVIPLS 463

  Fly   338 G 338
            |
Zfish   464 G 464

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Sr-CIVNP_608789.1 MAM 132..306 CDD:279023 44/202 (22%)
MAM 132..301 CDD:99706 43/197 (22%)
Somatomedin_B 336..376 CDD:279385 2/3 (67%)