DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sr-CIV and Malrd1

DIOPT Version :9

Sequence 1:NP_608789.1 Gene:Sr-CIV / 33576 FlyBaseID:FBgn0031547 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001274547.3 Gene:Malrd1 / 100361092 RGDID:2320868 Length:2117 Species:Rattus norvegicus


Alignment Length:293 Identity:76/293 - (25%)
Similarity:109/293 - (37%) Gaps:72/293 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 CD--GEKWSTQLGSCALRRQTID-----------------VSCDFESEDMCGWTAELSFLGTWKR 154
            ||  ...|..|..:|..:.|..|                 :.||||| .:|.|.........|.|
  Rat   782 CDEPDHFWCRQTKACIGKHQLCDLVDDCGDHTDEIGCAPELQCDFES-GICNWEQSTEDDFNWTR 845

  Fly   155 ----VSTVADFHSEKTGPQKDHTFQNQSIGHYVRMET-ESDAF-GTYHFLSPLYPKELSLSGACF 213
                .||:      .|||.||||....: |||:.:|| |..|| .....|||:. .....:|..|
  Rat   846 SQGPTSTL------NTGPMKDHTLGTAN-GHYLYIETSEPQAFQDKAVLLSPIL-NATEANGCSF 902

  Fly   214 QFHYFMFGSGVGSLLVSIKPVSVTIGDIFKTNHPYKFDQFVMTGSQGARWLEHTIDINKMDEDFQ 278
            :..|.|||..|..|.|..:..|.:.|.:.          :.:.|.||.||:...:.|... ..||
  Rat   903 RLFYHMFGKHVYRLAVYQRIWSNSRGQLL----------WQIFGDQGNRWIRKHLSITSR-HPFQ 956

  Fly   279 VIFTATDARSQYGDIAIDDVKLMAAKECA--RRSTFIEEPKKPIEESDITDSLGYQMTDCSGRCG 341
            ::..|:......|||||||:..|   :|.  ..:..::.|..|        .:...:|.....|.
  Rat   957 ILIVASVGDGFTGDIAIDDLSFM---DCTLYPDNLPMDIPSPP--------EISVPVTLPPNNCT 1010

  Fly   342 QDFVRGRYINEGCRCQESCLVNGNCCLNYVKEC 374
            .|             |..|..||: |:..:::|
  Rat  1011 DD-------------QFVCRSNGH-CVGKIQKC 1029

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sr-CIVNP_608789.1 MAM 132..306 CDD:279023 57/179 (32%)
MAM 132..301 CDD:99706 56/174 (32%)
Somatomedin_B 336..376 CDD:279385 8/39 (21%)
Malrd1NP_001274547.3 LDLa 31..60 CDD:238060
MAM 66..219 CDD:99706
MAM 229..377 CDD:421533
MAM 436..591 CDD:99706
MAM 613..768 CDD:99706
LDLa 785..818 CDD:238060 5/32 (16%)
MAM 824..980 CDD:99706 57/178 (32%)
LDLa 1009..1044 CDD:238060 8/35 (23%)
MAM 1049..1213 CDD:99706
LDLa 1223..1255 CDD:197566
MAM 1267..1420 CDD:99706
LDLa 1443..1477 CDD:238060
MAM 1481..1633 CDD:99706
LDLa 1646..1679 CDD:238060
MAM 1689..1850 CDD:99706
LDLa 1863..1898 CDD:238060
LDLa 1907..1938 CDD:197566
LDLa 1946..1982 CDD:238060
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 77 1.000 Domainoid score I8632
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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