DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pif1 and AT5G28780

DIOPT Version :9

Sequence 1:NP_001285587.1 Gene:Pif1 / 33567 FlyBaseID:FBgn0031540 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_198230.1 Gene:AT5G28780 / 832993 AraportID:AT5G28780 Length:337 Species:Arabidopsis thaliana


Alignment Length:310 Identity:77/310 - (24%)
Similarity:121/310 - (39%) Gaps:65/310 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   369 SSAWET---CIQCVYELKQVH----RQSDPEFVKILNHLRIGHVNDSITSRLAATSK-------- 418
            ::.|.|   | .|.|.:...:    ...|.|.|::.....:.|..    :||...:|        
plant    48 NTKWNTSRHC-TCCYNVGNGNAPTCETDDGEVVEMDTSFFLKHNG----NRLQQVTKGAYVQFSV 107

  Fly   419 -----QKIEGNGILATQLCSHTNDANSINESKLENLDGDK-------ILFKAD----DSDASMTR 467
                 |.:...|||.    .|....:.||...|..:.||.       .:.|||    |.:|....
plant   108 SQPNFQYLTERGILT----PHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKADTIGADYEALYHV 168

  Fly   468 TLDQQIQAPS----QLYLKVNAQVMLLKNINISNGLVNGARGVVVRMEK---DLPVVRFKNNQEY 525
            .....::.||    ::.||....:|.::|.|...||.||.|.:|..:.:   :..:|...:..:.
plant   169 KYLNSLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHAGKM 233

  Fly   526 VCKHERWIIKTASGNH---ITRRQVPLKLAWAFSIHKSQGLTLDCVEMSL-SKVFEAGQAYVALS 586
            | ...|:|:......|   :.|:|.|:::.:|.:|.|:||.:|....:.| :.||...|.|||||
plant   234 V-SIPRFILSPPQSEHPFTLRRQQFPMRVCYAMTIIKNQGQSLKSDVLYLPNPVFSHVQLYVALS 297

  Fly   587 RAKSLQSIRILDFDAKQVWANPHVLQF-YKGFRRKLMDTTMIPLGPKNKD 635
            |..|...:.||..|.::   |..|... ||.|...|         ||..|
plant   298 RVTSPIGLTILHGDDQK---NDEVKNIVYKEFYNDL---------PKETD 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif1NP_001285587.1 P-loop_NTPase 205..510 CDD:304359 40/175 (23%)
AT5G28780NP_198230.1 P-loop_NTPase <62..215 CDD:304359 35/160 (22%)
Herpes_Helicase <264..302 CDD:280797 16/37 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0507
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002406
OrthoInspector 1 1.000 - - otm3076
orthoMCL 1 0.900 - - OOG6_100049
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.800

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