DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pif1 and pif-1

DIOPT Version :9

Sequence 1:NP_001285587.1 Gene:Pif1 / 33567 FlyBaseID:FBgn0031540 Length:663 Species:Drosophila melanogaster
Sequence 2:NP_490774.2 Gene:pif-1 / 171665 WormBaseID:WBGene00004028 Length:677 Species:Caenorhabditis elegans


Alignment Length:662 Identity:251/662 - (37%)
Similarity:373/662 - (56%) Gaps:75/662 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LTCAVNMEWTNAVGITGRK---LAYKTATLRLVRNDLRELFVEV---TPEKLKP--LKFKLKDLM 64
            |.|::.:|.|:::    :|   ::.|:|.:.:.||..|::.:::   |....:|  :.:.:.|.:
 Worm    26 LECSLRIESTSSI----KKKTPISSKSAIMTVGRNAQRKIHLQIELKTTATGQPAVVCYDVTDAV 86

  Fly    65 VHKKFMSEGKATFNFKAEKCTLYLSNAPPGTLMFFLRTIFVKMNGNEGGSQPDDATLQKKLREHL 129
            ||.:.::.||.|....:......:.|..|..|..|::::..|::..:....|..|..::      
 Worm    87 VHLQSVANGKCTVEIPSLSLMFQMFNCAPRKLNVFMKSLQAKLDIMKMEKSPISAVPRQ------ 145

  Fly   130 MSGKPSSFNDVSPVTTAEMILARKKAGLLSKGSVTTPSPQG-AKKRRFEEL-------------- 179
            .|..|:.|:.:||:|.:||   ||...|....::..||.:. ..|||...:              
 Worm   146 FSRPPAVFSVLSPLTISEM---RKVKKLREPSALARPSKEATTPKRRTSSMNLLAGGLENRIMNR 207

  Fly   180 -----------KEEKERGTMPAAKKLY--ASTTDESLRLSEEQMEVLRACTSGK-SVFFTGSAGT 230
                       ::::|:.....:.|.:  |....|.::||:||..|:|...:.: ||||||||||
 Worm   208 SIGLKRTTSFARDDREKAETLVSLKSFKDAPAISERIQLSDEQKSVVRCVINSRTSVFFTGSAGT 272

  Fly   231 GKSFLLRRIISALPPDGTVATASTGVAACLIGGTTLHAFAGIGGGDATMQRCLELASRPAN-AQT 294
            |||.:|||||..||...|..||:|||||..|||.|||||.|....::|.::||:...|..: .:.
 Worm   273 GKSVILRRIIEMLPAGNTYITAATGVAASQIGGITLHAFCGFRYENSTPEQCLKQVLRQNHMVRQ 337

  Fly   295 WRKCKRLIIDEISMVDGQFFEKIEAVARHIRRNDRPFGGIQLILCGDFLQLPPVIKGDFGAAPTA 359
            |::|..||||||||:|..|||.:|.|||.:|.||:||||||||:.|||.|||||.|.:    |. 
 Worm   338 WKQCSHLIIDEISMIDRDFFEALEYVARTVRNNDKPFGGIQLIITGDFFQLPPVSKDE----PV- 397

  Fly   360 TPQQRFCFQSSAWETCIQCVYELKQVHRQSDPEFVKILNHLRIGHVNDSITSRLAATSKQKIEGN 424
                 |||:|.||..|||....||.|.||:|..||||||::|:|..:......|..:||.:.. :
 Worm   398 -----FCFESEAWSRCIQKTIVLKNVKRQNDNVFVKILNNVRVGKCDFKSADILKESSKNQFP-S 456

  Fly   425 GILATQLCSHTNDANSINESKLENLDGDKILFKADDSDA----SMTRTLDQQIQAPSQLYLKVNA 485
            .::.|:||:|::||:.||.|.:|...||...|.|.|.::    :..|||.|:     :|.|||.|
 Worm   457 SVIPTKLCTHSDDADRINSSSIETTQGDAKTFHAYDDESFDTHAKARTLAQK-----KLVLKVGA 516

  Fly   486 QVMLLKNINISNGLVNGARGVVVRM-EKDLPVVRFKNNQE--YVCKHERWIIK-TASGNHITRRQ 546
            ||||:|||::..||.||:||.|.:. |...|::||.:..:  ...:..::.:: ..|...:.|||
 Worm   517 QVMLIKNIDVIKGLCNGSRGFVEKFSENGNPMIRFVSQADASIEIRRSKFSVRIPGSDAPLIRRQ 581

  Fly   547 VPLKLAWAFSIHKSQGLTLDCVEMSLSKVFEAGQAYVALSRAKSLQSIRILDFDAKQVWANPHVL 611
            :||:||||.|||||||:||||.|:||.:||..||||||||||:||.:|||:.|||..|.||..|:
 Worm   582 LPLQLAWAISIHKSQGMTLDCAEISLERVFADGQAYVALSRARSLAAIRIIGFDASCVRANSKVI 646

  Fly   612 QFYKGFRRKLMD 623
            .|||....:..|
 Worm   647 DFYKSIEAECDD 658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pif1NP_001285587.1 P-loop_NTPase 205..510 CDD:304359 150/310 (48%)
pif-1NP_490774.2 P-loop_NTPase 245..541 CDD:304359 150/311 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166355
Domainoid 1 1.000 200 1.000 Domainoid score I1776
eggNOG 1 0.900 - - E1_COG0507
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H99775
Inparanoid 1 1.050 384 1.000 Inparanoid score I1171
Isobase 1 0.950 - 0 Normalized mean entropy S2212
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D413010at33208
OrthoFinder 1 1.000 - - FOG0002406
OrthoInspector 1 1.000 - - oto19894
orthoMCL 1 0.900 - - OOG6_100049
Panther 1 1.100 - - LDO PTHR23274
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R921
SonicParanoid 1 1.000 - - X3535
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.780

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