DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msl-2 and msl2

DIOPT Version :9

Sequence 1:NP_523467.1 Gene:msl-2 / 33565 FlyBaseID:FBgn0005616 Length:773 Species:Drosophila melanogaster
Sequence 2:XP_002939962.1 Gene:msl2 / 100125142 XenbaseID:XB-GENE-5773362 Length:580 Species:Xenopus tropicalis


Alignment Length:665 Identity:151/665 - (22%)
Similarity:236/665 - (35%) Gaps:223/665 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AQTAYLKVTRIAMR------SASNLSKRRVEELNSGLGELRQLLSCVVCCQLLVDPYSPKGKRCQ 60
            |...|:..:|:.:.      .||       .|:...|...||.|:|.||.:||.||.:|....||
 Frog     6 ATALYISASRLVLNYHPGDPQAS-------AEICKMLPYFRQALACCVCGKLLEDPIAPINSTCQ 63

  Fly    61 HNVCRLCLRGKKHLF-PSCTQCEGCSDFKTYEENRMMAAQLLCYKTLCVHLLHSALFGELAGMRP 124
            |.||:.| :|||.:. |||:.|:   |::.:|||:.::..:.|||.||.::..:.|         
 Frog    64 HYVCKQC-KGKKMMMKPSCSWCK---DYEQFEENKQLSILVNCYKKLCEYITQTPL--------- 115

  Fly   125 QVARELVPRIKLPPKTTQEFIREGSNISDTFDI--FLPQPDLPFLKDMPTSLPAETPPTSAVTTP 187
              |::::                 :.:..:.||  |||                |.||       
 Frog   116 --AQDIL-----------------NTVECSADILAFLP----------------EEPP------- 138

  Fly   188 ELPYDHHLNISDIEAEAAATAEQGHFSPLPL------LPTGSRMGMLSHAGQIVIATESSESGFM 246
                        :|.:..:|:|    .|.||      |||.|..|             |.....:
 Frog   139 ------------VEEKQESTSE----PPSPLCRSHSPLPTKSEHG-------------SEHEATI 174

  Fly   247 DQAWTDQVDLSGTVSVSKYTNSGNNFA-----VSYVMPTSATTKFDPQELQIGQV-VQMADSTQL 305
            .|...|:..:.....||....:.|..:     |:...|.|.:    |.:|....| ::..|.:: 
 Frog   175 CQLPQDRPSIEAECLVSNGLPNCNGLSETELPVNIPSPESPS----PMDLCCTAVDIKTEDLSE- 234

  Fly   306 AVLAAVEETVETSTQLTV----------------LSTTVEETVETSTQLEVLTSAEEPNEISDQL 354
             .|..|.:.|.||.....                |..:|||.:::   ||.::|.|..:  .|..
 Frog   235 -SLDTVCDPVSTSDLCAAGLDICGYNDDLKSGGPLLLSVEEVLQS---LETVSSTEVSD--CDLQ 293

  Fly   355 ANLQVEESDEALVEETVEEAEGTSIPSEVVAEHMEEDQHLDVHTSQSPTQTEMEEAVEEHVATKT 419
            .:|....|:.|.:|         ..|..:....:..|.|...|.....|.|              
 Frog   294 HSLDTTASNGAFLE---------LCPQPLTHTVLLSDSHAPAHGISCTTAT-------------- 335

  Fly   420 QLGHVQTELQDAESLQKDFEDAKAAAEEAKEKEKDLHAISAELQKE-DSDEPTLKRKRTRT---- 479
             |..|:|..:            ::.:|...||...|...|..|... .|..|.|..:..|.    
 Frog   336 -LKMVKTHRK------------RSRSESDSEKVLPLPISSIILGPTLGSPAPLLLTRENRNFLQP 387

  Fly   480 -----------------LKASQAAKIEPVPSEVKTKVQSGKGALRRIRGKDK-EEKV-------- 518
                             |.:::..|..|.....||. |..|.||  ::.||| :||:        
 Frog   388 MATVPNGGSSPKISKTILLSNKNLKKNPEHGPKKTH-QKSKPAL--LKTKDKVKEKIPTNNVVPG 449

  Fly   519 --------KPPKPK-CRCGISGSSNTLTTCRNSRCPCYKSYNSCAGCHCVCCKNPHKEDYVESDE 574
                    ||.:.| |:||.:..:.::.|||..|||||.:..:|..|.|..|:|    .|:.:.|
 Frog   450 SPTKTVYKKPQEKKGCKCGRATQNPSVLTCRGQRCPCYSNRKACLDCICRGCQN----SYMANGE 510

  Fly   575 DDDLEDFEMPKDVPE 589
             ..||.|.:|:...|
 Frog   511 -KKLEAFAVPEKALE 524

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msl-2NP_523467.1 zf-RING_10 39..111 CDD:293290 31/72 (43%)
MSL2-CXC 520..567 CDD:293287 18/47 (38%)
msl2XP_002939962.1 zf-RING_10 42..111 CDD:374725 31/72 (43%)
RING-HC finger (C3HC4-type) 44..84 CDD:319436 20/40 (50%)
MSL2-CXC 458..512 CDD:374722 21/58 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 67 1.000 Domainoid score I9719
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006426
OrthoInspector 1 1.000 - - oto102357
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4669
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.030

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