DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cog3 and cog3

DIOPT Version :9

Sequence 1:NP_608779.1 Gene:Cog3 / 33562 FlyBaseID:FBgn0031536 Length:905 Species:Drosophila melanogaster
Sequence 2:XP_002941013.3 Gene:cog3 / 100497861 XenbaseID:XB-GENE-855843 Length:821 Species:Xenopus tropicalis


Alignment Length:840 Identity:369/840 - (43%)
Similarity:520/840 - (61%) Gaps:53/840 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 QSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWRDSGPSAPAP----TTPTQVGPT 68
            |.|.|    .|:||..|:...||||.|:.:|.:.:..:.....|....|..|    .:.|....|
 Frog     5 QEEQE----ARDRLALWDRGPDPLALLTDRQTDSILEIKAAAEDLPVPAELPIEDLCSLTSRSLT 65

  Fly    69 DSSAAATSQSGDDI--------RLPAEGLQNTNEFLLWFADVSAEIEQRGDADYHKYLQQLEQRK 125
            .:.:||..:|.:||        .:..:.::...:|..||..:...::..|.|.|.:....|...:
 Frog    66 VTLSAAVPESTEDILKQGFSMLGMEEDRIETAQQFFSWFDKLQIHMDHDGSAKYREMRDFLAGFQ 130

  Fly   126 AECSHMLDQIAGAMERLGALCDEYDFVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQV 190
            .:|..:|:.:..|:|.|.:|..:|.|||.||..|:.|.|||::||....:|:..||::|.||:::
 Frog   131 EQCDAILNDVNVALEHLESLQKQYLFVSTKTGTLHEACEQLLKEQSEFVQLAENIQQKLSYFNEL 195

  Fly   191 ELLNQRLQSPTLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLVRNYVT 255
            |.:|.:|.||||||.||.|...|.|:|:|:.||..:|.:||...|..|::|||.||..|::||..
 Frog   196 ETINTKLNSPTLSVNSEGFIPMLTKLDDCITYISAHPNYKDYPVYMAKFKQCLYKAMHLMKNYTV 260

  Fly   256 SVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKVKRVAQLIESRSEHSLDYAQL 320
            :.:...|...:  |.:..:||..    |.||.|:|.|::.||.||:.:.:.:|.|||...:|.||
 Frog   261 NTMQNLTSQLI--KRDSSNASTT----DNAFTLFYVKFRAAAPKVRTLIEQVEQRSEKIPEYQQL 319

  Fly   321 MADLQQHYLAQRASVMSPAVNLSIQNVKVAHKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGA 385
            ::::.|.||.||.|::||::..:|.::...:..|||:|.||.|||:|||||||..|:.:||:...
 Frog   320 LSEIHQCYLDQRESLLSPSITTTITDLTSQNNRDHCALVRSGCAFMVHVCQDEHHLYNEFFTKPT 384

  Fly   386 PHLTVYLEGLCTILYDTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL 450
            |.|.|.||.||..|||..||.|||:.|||||:|:|.||:|||||:|||.:...|.|||.:..|:|
 Frog   385 PKLDVLLEKLCLSLYDVFRPLIIHVVHLETLSELCGILKIEMLEDHVQNSVEHLGAFAAVVKQML 449

  Fly   451 QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQE-------------PAPLR 502
            :|||||||:|.|:|:||||..:.|:.||||||:||||||.||.|::|             ...|.
 Frog   450 EDVQERLVYRTHIYIQSDILGYKPAPGDLAYPDKLEMMEKIAQSIKEEQQRLHSTESSFSDVHLE 514

  Fly   503 RSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTLVCLSRLYRCVDRPIFQG 567
            ..||.|.:.|..|.::..:...|.       |||||||||||||||||||||:||||:||.:|||
 Frog   515 DPDSNNLIKSGASESLSQKPQNTV-------SPADLHGMWYPTVRRTLVCLSKLYRCIDRAVFQG 572

  Fly   568 LSQEALKLCIQSVSHAAGKISANKTPIDGELFEIKHLLILREQIAPFRVDFTVKETSLDFSKVKT 632
            ||||||..||||:..|:..|:.|||.|||:||.||||||||||||||..:||:||.|||..|.:.
 Frog   573 LSQEALSACIQSLLGASEAITKNKTQIDGQLFLIKHLLILREQIAPFHTEFTIKEISLDLKKTRD 637

  Fly   633 AAFGLLQKR--KQLFSMGSNNALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLV 695
            |||.:|..|  .:.|.:.||||||||||:|||:||||.:||:|:|||.||:.||::|:...::.|
 Frog   638 AAFKILHPRTVPRFFRLNSNNALLEFLLQGTPEIKEHFIDSKKDVDRHLKAACEQFIQQQSKIFV 702

  Fly   696 GPLITFLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRLIKAKLAVLQR 760
            .||..|:.|..:|...::...|:        |.|.|.|||.|.:|:.::..|.:.:|.||.|..|
 Frog   703 EPLEDFMTKVTALKTMASQGGPK--------YSLSQQPWAQPVKINDLVSSTYKTMKTKLPVTLR 759

  Fly   761 SMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYSTDDMIITSCPSAEQVSILLS 820
            .|.|||:|:|||||:|:|:|:||.|.|.|:..||... ::::|:.|.:|||.|||::|||
 Frog   760 GMSLYLANKDTEFILFKPVRSNIQQVFQKIHMLLKEE-FASEDLQIIACPSMEQVNLLLS 818

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cog3NP_608779.1 Sec34 117..261 CDD:282049 57/143 (40%)
cog3XP_002941013.3 Sec34 123..266 CDD:398005 57/142 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 537 1.000 Domainoid score I273
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H5854
Inparanoid 1 1.050 632 1.000 Inparanoid score I828
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D389527at33208
OrthoFinder 1 1.000 - - FOG0004677
OrthoInspector 1 1.000 - - oto104182
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4392
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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