DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and SNX4

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_012498.1 Gene:SNX4 / 853416 SGDID:S000003573 Length:423 Species:Saccharomyces cerevisiae


Alignment Length:418 Identity:108/418 - (25%)
Similarity:189/418 - (45%) Gaps:68/418 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 YFISIVVSDPQK-IGD-GMGS-YLAYKVTTKTNIPKF--KRSEFSTL----RRFSDFLGIHDLLV 128
            |:..|:|||||| .|| |..| |::|:::||||...|  .|.:..::    ||:||.|.:||:|:
Yeast    26 YWFEIIVSDPQKRTGDPGSSSGYVSYQISTKTNNTSFYDNRGDPESIIVVHRRYSDLLLLHDILL 90

  Fly   129 GKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVD 193
            .::...  ||||.|.|.:.          |...|...:|.:.:.|..:|:.|:.|.:.||.|...
Yeast    91 NRFPTC--IIPPLPDKKVF----------QYIAGDRFSQRFTQKRCHSLQNFLRRVSLHPDLSQS 143

  Fly   194 LDFMNFLES-DQELPRSV-------NTSALSGA--GVIRLFNKVGETVNKITYKMDENDPWFDDK 248
            ..|..||.| |.|..|.|       |...::.|  ...:..:|..|...:|..|.|:    .|..
Yeast   144 KVFKTFLVSKDWESHRKVLQDSLQPNKDEVTDAFMNAFKTVHKQNEEFTEIREKSDK----LDRT 204

  Fly   249 ITEVESLDANLQKLHNAMK----SLVTSRREL-SLLTGLVAKSAAMLSTCEEH-TGLSRALSNLA 307
            :|:::.|...:.|.:::|.    .|.::.:|| .|:||...:.||.|....|. |.||..|.:|.
Yeast   205 VTKIDKLFHKVVKKNDSMSEDYTKLGSNLQELQELVTGENEELAAKLKIFNEGVTQLSYGLQDLT 269

  Fly   308 ------------DVEEKIELLR-----SEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQN 355
                        |:|..|:.:|     .:|...|:    |.:.||  |..:||    |:......
Yeast   270 KYLDYEYIVDLKDLEHYIDSMRQLIKLKDQKQIDY----EELSDY--LTRSIK----EKNNLISG 324

  Fly   356 WQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELT 420
            :..:....:|..|..|..:.|:|.:|:::.:.::....|:::..::..|....|..:|::.||..
Yeast   325 YGGSNFFANKLEELAGINQEASRREKINKLEGKITSLTGELENAKKVADGFEQECLKEIDHFESV 389

  Fly   421 RVKDFKVNIIKYIEDQMAHQQQIVSYWE 448
            :..:.|.::....:..:...::|:..||
Yeast   390 KTAEIKKSLGSLADHHIEFYERILEAWE 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 47/137 (34%)
BAR_SNX1_2 232..455 CDD:153307 52/240 (22%)
SNX4NP_012498.1 COG5391 1..423 CDD:227680 108/418 (26%)

Return to query results.
Submit another query.