DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and SNX2b

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001331853.1 Gene:SNX2b / 830603 AraportID:AT5G07120 Length:572 Species:Arabidopsis thaliana


Alignment Length:510 Identity:123/510 - (24%)
Similarity:213/510 - (41%) Gaps:119/510 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVSALSPSSIGDIHPLQEVLTDDGDYFI 75
            |.:|::       ||||...:    .|.:|.|          ||||:            ..|| |
plant   112 DISEIN-------GSEDGHSQ----SSDSLSR----------SPSSL------------SSDY-I 142

  Fly    76 SIVVSDPQKIGD-------GMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMR 133
            .|.||:|||..:       |..:|:.|::||:||:..:..||||..|||.|.:.:.|.|...|. 
plant   143 KITVSNPQKEQEATNSMIPGGSTYITYQITTRTNLSDYGGSEFSVRRRFRDIVTLADRLAESYR- 206

  Fly   134 LGRIIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMN 198
             |..|||.|.|:|:.|..::            .||:||.||.|||:::.|...|||:|...:...
plant   207 -GFCIPPRPDKSIVESQVMQ------------KQEFVEQRRVALEKYLRRLVAHPVIRNSDELKV 258

  Fly   199 FLESDQELPRSVNTSALS-------------------------------GAGVIRLFNKVGETVN 232
            ||::..:||.:.:|...|                               |...:|:|.::.::|:
plant   259 FLQAQGKLPLATSTDVASRMLDGAVKLPKQLFGEGGGASSVEVVQPGRGGRDFLRMFKELRQSVS 323

  Fly   233 KITYKMD---------ENDPWFDDKITEVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAA 288
            .     |         |.|..|.:|..::..|:..:.......:|||.:::::....|.:..:..
plant   324 N-----DWGGSKPPVVEEDKEFLEKKEKMYDLEQQIINASQQAESLVKAQQDMGETMGELGLAFI 383

  Fly   289 MLSTCEEHTGL-----SRA--LSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIF 346
            .|:..|....:     :||  :.|||....|......| .||......:.:.|||||..|::..|
plant   384 KLTKFENEEAVFNSQRARANDMKNLATSAVKASRFYRE-LNSQTVKHLDTLHDYLGLMMAVQGAF 447

  Fly   347 HERVKAFQNWQYAQMQLSKRRENRGRFELA---------NRADKLDQAQQEVDEWQGKVQRCQQQ 402
            .:|..|....|....:||.......:.|:|         :|..|:::.::.:...:.......::
plant   448 ADRSSALLTVQTLLSELSSLEARAEKLEVASSKVFGGDKSRIKKIEELKETIKVTEDSKNVAIRE 512

  Fly   403 FDDISAEIKREMERFELTRVKDFKVNIIK-YIEDQMAHQQQIVSYWEAFAPFARE 456
            ::.|......|:||.:..|..|| :|::| ::.:|:.:.::|.:.|...|...|:
plant   513 YEQIKENNWSEVERLDRERRADF-LNMMKGFVANQVGYAEKIANVWTKVAEETRQ 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 49/134 (37%)
BAR_SNX1_2 232..455 CDD:153307 50/248 (20%)
SNX2bNP_001331853.1 PX_SNX_like 143..263 CDD:132775 48/133 (36%)
BAR_SNX 335..563 CDD:153280 49/229 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D947320at2759
OrthoFinder 1 1.000 - - FOG0001310
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.