DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and Snx2

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001344392.1 Gene:Snx2 / 67804 MGIID:1915054 Length:523 Species:Mus musculus


Alignment Length:491 Identity:227/491 - (46%)
Similarity:320/491 - (65%) Gaps:47/491 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SPEHTRDFAEVDI---NNGAATGS---EDEEEEV--PAPGSVTLDRNESDLFVSA--------LS 53
            |||.....|| ||   :||:....   :|:.|::  .|...|:||..|.:|.:|:        ::
Mouse    41 SPEPASLPAE-DISANSNGSKPVEVVLDDDREDLFAEATEEVSLDSPERELILSSEPSPAVTPVT 104

  Fly    54 PSSIGDIHPLQE-------VLTD----------DGDYF-ISIVVSDPQKIGDGMGSYLAYKVTTK 100
            |:::  |.|..|       |:.|          :||.| |.|.||||:|:||||.:|:||:||||
Mouse   105 PTTL--IAPRIESKSISAPVIFDRSRDEIEEEANGDIFDIEIGVSDPEKVGDGMNAYMAYRVTTK 167

  Fly   101 TNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPGTPM 165
            |::..|.:||||..||||||||:|..|..||:.:|.|:||||.|:|:|.||||:..:.|.     
Mouse   168 TSLSMFSKSEFSVKRRFSDFLGLHSKLASKYLHVGYIVPPAPEKSIVGMTKVKVGKEDSS----- 227

  Fly   166 TQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLESDQELPRSVNTSALSGAGVIRLFNKVGET 230
            :.|:||.|||||||::.||.:||.|..|.|...|||| .||||:|||.||||||::|:.||..:.
Mouse   228 STEFVEKRRAALERYLQRTVKHPTLLQDPDLRQFLES-SELPRAVNTQALSGAGILRMVNKAADA 291

  Fly   231 VNKITYKMDENDPWFDDKITEVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEE 295
            |||:|.||:|:|.||::|..:.|:||..|:|||.::::||..|:|||..|...|||||||...|:
Mouse   292 VNKMTIKMNESDAWFEEKQQQFENLDQQLRKLHASVEALVCHRKELSANTAAFAKSAAMLGNSED 356

  Fly   296 HTGLSRALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQ 360
            ||.||||||.||:|||||:.|..|||.:||::.:|.:.||:.|..|:|.:|..|:|.:|.|:.||
Mouse   357 HTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAVKGVFDHRMKCWQKWEDAQ 421

  Fly   361 MQLSKRRENRGRFELANRADKLDQA----QQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTR 421
            :.|.|:||...:..:||:.||:.||    ::|::||:.|||:.::.|:.||..|::|:.|||..|
Mouse   422 ITLLKKRETEAKMMVANKPDKIQQAKNEIREEIEEWEAKVQQGERDFEQISKTIRKEVGRFEKER 486

  Fly   422 VKDFKVNIIKYIEDQMAHQQQIVSYWEAFAPFAREI 457
            |||||..||||:|..:..|||::.|||||.|.|:.|
Mouse   487 VKDFKAVIIKYLESLVQTQQQLIKYWEAFLPEAKAI 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 70/127 (55%)
BAR_SNX1_2 232..455 CDD:153307 110/226 (49%)
Snx2NP_001344392.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 30..62 9/21 (43%)
Sorting_nexin <49..112 CDD:308990 17/65 (26%)
PX_SNX2 142..265 CDD:132815 71/128 (55%)
Membrane-binding amphipathic helix. /evidence=ECO:0000250|UniProtKB:O60749 278..295 8/16 (50%)
BAR 283..520 CDD:325158 114/236 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845765
Domainoid 1 1.000 238 1.000 Domainoid score I2295
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2332
Inparanoid 1 1.050 407 1.000 Inparanoid score I1868
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53591
OrthoDB 1 1.010 - - D299625at33208
OrthoFinder 1 1.000 - - FOG0001310
OrthoInspector 1 1.000 - - otm44274
orthoMCL 1 0.900 - - OOG6_102065
Panther 1 1.100 - - LDO PTHR10555
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 1 1.000 - - X1340
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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