DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and Snx9

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_079940.2 Gene:Snx9 / 66616 MGIID:1913866 Length:595 Species:Mus musculus


Alignment Length:532 Identity:114/532 - (21%)
Similarity:184/532 - (34%) Gaps:178/532 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 FAEVDINNGAATGSEDE-EEEVPAPGSVTLDRNESDLFVSALSPSSIGDIH-------------- 61
            |.......|.|||.:|| :|:...|.|       |..:.....|:..|.|.              
Mouse   147 FGHPQAYQGPATGDDDEWDEDWDDPKS-------SSPYFKDSEPAEAGGIQRGNSRAGASSMKLP 204

  Fly    62 -----------------------PLQEVLTDDGDY---------FISIVVSDPQKIGD---GMGS 91
                                   |.:::....|||         ....||:||:| |.   |:.|
Mouse   205 LNKFPGFAKPGMEQYLLAKQLAKPKEKIAIIVGDYGPMWVYPTSTFDCVVADPRK-GSKMYGLKS 268

  Fly    92 YLAYKVT-TKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIP-PA-PSKNIIGSTKVK 153
            |:.|::| |.||        .|...|:..|..:::.|:.|:   |..|| |: |.|.:.|.    
Mouse   269 YIEYQLTPTNTN--------RSVNHRYKHFDWLYERLLVKF---GSAIPIPSLPDKQVTGR---- 318

  Fly   154 ISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLESDQEL-----PRSVNTS 213
                       ..:|::::|...|:.::.|..:|||:.....|..||....|.     .|.....
Mouse   319 -----------FEEEFIKMRMERLQAWMTRMCRHPVVSESEVFQQFLNFRDEKEWKTGKRKAEKD 372

  Fly   214 ALSGAGVIRLFNKVG---------------ETVNKITYKMDENDPWFDDKITEVES--------- 254
            .|.|   :.:|:.:.               :.|.|.|..|       ||.:.|:.:         
Mouse   373 ELVG---VMIFSTMEPEAPDLDLIEIEQKCDAVGKFTKAM-------DDGVKELLTVGQEHWKRC 427

  Fly   255 ---LDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTC--EEHTGLSRALSNLADVEEKIE 314
               |....||:..|::||                 ||:.|:.  :..|.|:.|::......|:|.
Mouse   428 TGPLPKEYQKIGKALQSL-----------------AAVFSSSGYQGETDLNDAITEAGKTYEEIA 475

  Fly   315 LLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGRFELANRA 379
            .|.:||...|...|.|...:|.|..|.    |.:.:.|                ::|..|....:
Mouse   476 SLVAEQPKKDLHFLMECNHEYKGFLGC----FPDIIGA----------------HKGAIEKVKES 520

  Fly   380 DKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQQIV 444
            ||| .|..::.. |.| |...::...:|..::.||..|...|:.|:...|..|:|.|       |
Mouse   521 DKL-VATSKITP-QDK-QTMVKRVGTMSYALQAEMNHFHSNRIYDYNSVIRLYLEQQ-------V 575

  Fly   445 SYWEAFAPFARE 456
            .::|..|...|:
Mouse   576 QFYETIAEKLRQ 587

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 36/133 (27%)
BAR_SNX1_2 232..455 CDD:153307 53/236 (22%)
Snx9NP_079940.2 SH3_SNX9 4..60 CDD:212831
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 89..199 14/58 (24%)
Critical for tubulation activity. /evidence=ECO:0000250 201..213 0/11 (0%)
PX_SNX9 250..375 CDD:132818 38/151 (25%)
BAR_SNX9 386..595 CDD:153352 55/256 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.940

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