DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx1 and snx1b

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001028907.1 Gene:snx1b / 619253 ZFINID:ZDB-GENE-050913-82 Length:524 Species:Danio rerio


Alignment Length:451 Identity:191/451 - (42%)
Similarity:293/451 - (64%) Gaps:16/451 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TRDFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVSALSPSSI-GDIHPLQEVLTDDGD 72
            |....|:.:.|..:.|    ..|:..|.:...  |.:.:..|.|.||.: ..:..|:|  .:.||
Zfish    87 TEATVELTLTNTTSQG----RREIIGPTASAC--NTTHVPNSILKPSIVTKTMEELEE--EESGD 143

  Fly    73 YF-ISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGR 136
            .| ::|.|::|:||||||.:|::|||:|:|.:|.|....|:..||||||||:::.:..|...:|.
Zfish   144 QFELNIAVTNPEKIGDGMTAYMSYKVSTQTTLPMFANKTFTVRRRFSDFLGLYEKMSAKNSLMGC 208

  Fly   137 IIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLE 201
            ||||||.|:::|.||||:..:.|.     :.|:||.|||||||::.|...||.|..|.|...|||
Zfish   209 IIPPAPQKSVVGMTKVKVGKEDSS-----SAEFVEKRRAALERYLQRVVAHPSLLQDPDVREFLE 268

  Fly   202 SDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFDDKITEVESLDANLQKLHNAM 266
            .| ||||:|||..|||.|::::.|:..:.|||:|.|::|:|.||:.|:.|||:.:..|::||.|:
Zfish   269 RD-ELPRAVNTQTLSGPGLLKMINRASDAVNKMTIKINESDNWFESKLQEVENEEQLLRRLHAAV 332

  Fly   267 KSLVTSRRELSLLTGLVAKSAAMLSTCEEHTGLSRALSNLADVEEKIELLRSEQANSDFFILAEF 331
            .|||..|:||.:.|.:.:||.|||.:.||::.||||||.||:||:|:|.|..:||.||||||||.
Zfish   333 DSLVNHRKELCINTAVFSKSVAMLGSVEENSALSRALSQLAEVEDKMEQLHQQQAFSDFFILAEL 397

  Fly   332 IKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKV 396
            :.||:.|.||::|.|.:|:|.:|..|.||:.|.|:||...:...||:.:||.||:.:::||:.||
Zfish   398 LADYVRLLGAVRCCFEQRMKVWQRLQEAQITLQKKREAEAKLLWANKPEKLQQAKDDINEWESKV 462

  Fly   397 QRCQQQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQQIVSYWEAFAPFAREI 457
            .:.::.|:.::..:::|:.|||..:.:|||.:|:||:|..:..|.::|..||||.|.|:.|
Zfish   463 SQYERDFERVTCTVRKEVLRFEKEKARDFKQHIVKYLESLLHTQHRLVKCWEAFLPEAKAI 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 60/127 (47%)
BAR_SNX1_2 232..455 CDD:153307 99/222 (45%)
snx1bNP_001028907.1 Sorting_nexin 7..86 CDD:461016
PX_domain 147..270 CDD:470617 60/127 (47%)
BAR 288..521 CDD:472257 101/232 (44%)
Blue background indicates that the domain is not in the aligned region.

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