DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and snx2

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001032787.1 Gene:snx2 / 568737 ZFINID:ZDB-GENE-051120-45 Length:506 Species:Danio rerio


Alignment Length:490 Identity:215/490 - (43%)
Similarity:307/490 - (62%) Gaps:51/490 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 VESPEHTRDFAEVDINNGAATGSEDEEEEVPAPGSVTLDRNESDLFVSA---------------- 51
            :||||.....:||     |:|||...:.|     .:.||.:..|||..|                
Zfish    32 MESPEDLHVPSEV-----ASTGSNGPKAE-----QILLDDDTEDLFAEATEEVSLDSPERQPILS 86

  Fly    52 ---------LSPSSIG---DIHPLQEVLTDDGD-------YFISIVVSDPQKIGDGMGSYLAYKV 97
                     ::|.|||   ::........:|.|       ..|.|.||||:|:||||.:|:.|||
Zfish    87 DGPSPAITPVTPVSIGSRVELGAFDRSPEEDEDEQESRDTLDIQISVSDPEKVGDGMNAYMVYKV 151

  Fly    98 TTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPG 162
            |||:.:..|.|||....||||||||:|..|..||:.:|.|:||||.|:|:|.||||:..:...  
Zfish   152 TTKSCLSVFSRSEVCVRRRFSDFLGLHSKLASKYLHVGLIVPPAPEKSIVGMTKVKVGKEDLS-- 214

  Fly   163 TPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLESDQELPRSVNTSALSGAGVIRLFNKV 227
               :.|:||.||:||||::.||.:||.|..|.|.:.|||| .||||:|:|.||||||::|:.||.
Zfish   215 ---SVEFVEKRRSALERYLMRTVKHPALLKDPDVLQFLES-SELPRAVSTQALSGAGILRMVNKA 275

  Fly   228 GETVNKITYKMDENDPWFDDKITEVESLDANLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLST 292
            .:.|||:|.||:|.|.||::|..:.|:||..|:|||.:::|||..|:|||:.|.|.|||||||..
Zfish   276 ADAVNKMTIKMNEADAWFEEKQQQFENLDLQLRKLHASVESLVCHRKELSVNTALFAKSAAMLGN 340

  Fly   293 CEEHTGLSRALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQ 357
            .|:||.||||||.||:||||::.:..:||.:||::.:|.:.||:.|..|::.:|.:|:|.:..||
Zfish   341 SEDHTALSRALSQLAEVEEKMDQMHQDQAYADFYLFSELLGDYVRLITAVRGVFDQRMKTWAKWQ 405

  Fly   358 YAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTRV 422
            .||:.|.::||...:.:.||:.|||.||:.|:.||:||||:.::.|:.||..|:||:.|||..||
Zfish   406 DAQVMLQRKREAEAKLQYANKPDKLQQAKDEIKEWEGKVQQGERDFEQISKNIRREVGRFEKDRV 470

  Fly   423 KDFKVNIIKYIEDQMAHQQQIVSYWEAFAPFAREI 457
            |||::.::||:|..:..|||::.|||||.|.|:.|
Zfish   471 KDFRIVVVKYLESLVHTQQQLIKYWEAFLPEAKAI 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 66/127 (52%)
BAR_SNX1_2 232..455 CDD:153307 107/222 (48%)
snx2NP_001032787.1 Sorting_nexin 33..101 CDD:281663 18/77 (23%)
PX_SNX2 129..252 CDD:132815 67/128 (52%)
BAR_SNX2 270..503 CDD:153348 111/232 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 222 1.000 Domainoid score I2521
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2332
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53591
OrthoDB 1 1.010 - - D299625at33208
OrthoFinder 1 1.000 - - FOG0001310
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102065
Panther 1 1.100 - - LDO PTHR10555
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1340
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
109.930

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