DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and snx30

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001017798.1 Gene:snx30 / 550496 ZFINID:ZDB-GENE-050417-330 Length:430 Species:Danio rerio


Alignment Length:470 Identity:111/470 - (23%)
Similarity:194/470 - (41%) Gaps:118/470 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 EEEVPAPGSVTLDRNESDLF------VSALSPSSIGDIHPLQEVLTDDG------DYFISIVVSD 81
            ||...:.....|:..|.||.      |...||:|...:  |..:..||.      |.|::  |.|
Zfish    28 EESARSRSPDVLNPGEKDLSLPNGTPVDTSSPASSSSL--LNRLQLDDDLDAETRDLFVT--VDD 88

  Fly    82 PQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRL-------GRIIP 139
            |:|....|.:|:.|:|.|||...:|...|:|..||:.||         .::|:       ..:||
Zfish    89 PKKHVSTMETYITYRVCTKTTRTEFDLPEYSVRRRYQDF---------DWLRIKLEDSQPTHLIP 144

  Fly   140 PAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLESDQ 204
            |.|.|.::.....:.|           :|:||.||.||::|:.|.|.||||..:..|..||.:..
Zfish   145 PLPEKFVMKGVVDRFS-----------EEFVETRRKALDKFLKRVADHPVLSFNEHFNAFLSAKD 198

  Fly   205 ELPRSVNTSALSGAGVIRLFNKVGETVNKIT--YK----------MDENDPWFDDKITEVESLDA 257
                      |:....:.|..|:||:|..:|  ||          |.|....|..|:   .::|.
Zfish   199 ----------LNKRQGLALLTKMGESVKYVTGGYKLRGRPVEFAAMGEYLDMFTQKL---GTIDR 250

  Fly   258 NLQKLHNAMKSLVTSRRELSLLTGLVAKSAAMLSTCEEH-----TGLSRALSNLADVEEKIELLR 317
            ..|::.......:...||.    |.|..|   .|:.||.     .|:|..:||.:...|::    
Zfish   251 IAQRIIKEQTEFLMELREY----GPVYSS---WSSFEEDLHEPLEGVSGCVSNCSSALEEL---- 304

  Fly   318 SEQANSDFF-ILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGRFE-----LA 376
            :|..:.||. :|.|::            ::.|.:|..         |.||.:.:..:|     :.
Zfish   305 TEDMSEDFLPVLREYV------------LYIESMKNV---------LKKRDQVQAEYETKLEAVV 348

  Fly   377 NRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTRVKDFKVNIIKYIEDQMAHQQ 441
            .|.||  :.....|     |::||.:.:..:|::|.:.:|::..:.:||:..:....:..:.:.:
Zfish   349 FREDK--KTPMPTD-----VEKCQDRVECFNADLKADWDRWQNNKRQDFRQLLTGMADKNIQYYE 406

  Fly   442 QIVSYWEAFAPFARE 456
            :.::.||:..|..::
Zfish   407 KCLAAWESLIPLLQD 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 42/134 (31%)
BAR_SNX1_2 232..455 CDD:153307 48/245 (20%)
snx30NP_001017798.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..66 10/39 (26%)
PX_SNX30 82..197 CDD:132816 43/136 (32%)
BAR_SNX30 181..418 CDD:153351 60/288 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D947320at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.