DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and snx10

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:XP_012820034.1 Gene:snx10 / 496527 XenbaseID:XB-GENE-942343 Length:205 Species:Xenopus tropicalis


Alignment Length:160 Identity:37/160 - (23%)
Similarity:62/160 - (38%) Gaps:22/160 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 ISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYM--RLGRI 137
            ||:.|.||:...:...||:.|::...||...|........|||.:|:.:...|....:  :|..:
 Frog    11 ISVWVRDPKVQKEDWHSYVDYEICVHTNSMCFTLKTSCVRRRFREFVWLRQKLQSNAVLTQLPEL 75

  Fly   138 IPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLES 202
            .|..|.        .|||..|:          :|.|...|:.|:::.....||..|.....||::
 Frog    76 PPRIPF--------FKISNSQN----------LEHRVRGLQEFLNKVLHCSVLLSDSRLHLFLQT 122

  Fly   203 DQELPRSVNTSALSGAGVIRLFNKVGETVN 232
              :|......:..||.....:|..:.:..|
 Frog   123 --QLSTEEIDACASGKTEYSVFEAIHKFAN 150

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 32/129 (25%)
BAR_SNX1_2 232..455 CDD:153307 1/1 (100%)
snx10XP_012820034.1 PX_SNX10 12..123 CDD:132808 31/130 (24%)

Return to query results.
Submit another query.