DRSC/TRiP Functional Genomics Resources

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Protein Alignment Snx1 and snx3

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_989030.1 Gene:snx3 / 394626 XenbaseID:XB-GENE-973408 Length:162 Species:Xenopus tropicalis


Alignment Length:146 Identity:47/146 - (32%)
Similarity:75/146 - (51%) Gaps:12/146 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 FISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGR-I 137
            |:.|.||:||.||.|.|.|..|:|..|||:|.||..|....||:|||    :.|..:..|..: :
 Frog    28 FLEIDVSNPQTIGVGRGRYTTYEVRLKTNLPIFKLKESCVRRRYSDF----EWLKSELERESKVV 88

  Fly   138 IPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNFLES 202
            :||.|.|...     :..|.:.:.|. ....::|.|:..||:|:::.|.||:.:.:.....||: 
 Frog    89 VPPLPGKAFF-----RQLPFRGDEGI-YDDSFIEERKQGLEQFINKVAGHPLAQNERCLHMFLQ- 146

  Fly   203 DQELPRSVNTSALSGA 218
            |:.|.::...|.:..|
 Frog   147 DEILDKNYTPSKIRHA 162

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 42/128 (33%)
BAR_SNX1_2 232..455 CDD:153307
snx3NP_989030.1 PX_SNX3 28..150 CDD:132826 44/132 (33%)
Blue background indicates that the domain is not in the aligned region.

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