DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and snx4

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001014368.1 Gene:snx4 / 323203 ZFINID:ZDB-GENE-030131-1923 Length:434 Species:Danio rerio


Alignment Length:487 Identity:104/487 - (21%)
Similarity:194/487 - (39%) Gaps:112/487 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 AATGSEDEEEEVPAPGSVTLDRNESDLFVSALSPSSIGDIHPLQEVLTDDGDYFI---SIVVSDP 82
            |.:||||    :...|:..|..:||.              :.|:..:.:.|...:   .|.|::.
Zfish     2 ADSGSED----IAVIGNTDLTPSESQ--------------NNLKNTMVEKGTSLLKKMEISVAEA 48

  Fly    83 QK-IGDG----MGSYLAYKVTTKTNIPKFKRSE------FSTLRRFSDFLGIHDLLVGKYMRLGR 136
            :| .|..    ..:|..|.:.|:   |....||      .|..||:|:|..:.:.|:..|..:  
Zfish    49 EKRTGKNAVNMQETYTVYLIETR---PVDAASEGTSPVPDSLWRRYSEFELLRNYLLVTYPFV-- 108

  Fly   137 IIPPAPSKNIIGSTKV--KISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDLDFMNF 199
            ::||.|.|.   :..|  |:|....:|      ::||.||..||.|:.|.|.||||..|..|..|
Zfish   109 VVPPLPEKR---AEFVWHKLSADNMDP------DFVERRRVGLENFLLRVASHPVLARDNIFYLF 164

  Fly   200 LESDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFDDKITEVESLDANLQKLHN 264
            |..::....:|..:........||     :.:| .|:::  .:|  |.:..|::.....||.:  
Zfish   165 LTEEKAWKETVFETGFQAKADSRL-----KALN-ATFRV--KNP--DKRFAEMKHYGDELQAV-- 217

  Fly   265 AMKSLVTSRRELSLLTGLVAKSAAML-STCEEHTGLSRALSNLADVEEKI-ELLRSEQANSDFF- 326
                       :|.|..:.|::|..| ...:.|....|..|..:.:|::: :.|:|...:.|.: 
Zfish   218 -----------VSQLLRVRARAADRLYGVYKVHGNYGRVFSEWSAIEKEMGDGLQSAGHHMDAYA 271

  Fly   327 -----IL------AEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGR-------- 372
                 ||      |:.:|:||....|::.:..:........:.|...||.:::.|..        
Zfish   272 ASIDDILEEEEHYADQLKEYLFYADALRAVCRKHELTQYELETAVQDLSSKKQQREELATGTVRT 336

  Fly   373 FELANRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIK--------------REMERFELTRVK 423
            |.|.....|| ..|:..::.:.|::..:.|.::....:|              .::|||:..:..
Zfish   337 FSLKGMTSKL-FGQETPEQREAKLKMLETQIEEGEEMVKDRNVECEEFVKGAWTDIERFKEQKDH 400

  Fly   424 DFKVNIIKYIEDQMAHQQQIVSYW----EAFA 451
            |.:..:|.|...|::..::.:..|    |.|:
Zfish   401 DLREALISYAIMQISMCKKGIQVWNNAKECFS 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 42/143 (29%)
BAR_SNX1_2 232..455 CDD:153307 48/260 (18%)
snx4NP_001014368.1 PX_SNX4 41..168 CDD:132774 42/140 (30%)
BAR_SNX4 189..432 CDD:153306 47/261 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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