DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and Snx8

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_001099382.2 Gene:Snx8 / 288504 RGDID:1305791 Length:459 Species:Rattus norvegicus


Alignment Length:429 Identity:97/429 - (22%)
Similarity:170/429 - (39%) Gaps:119/429 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 AATGSEDEEEEVPAPG----SVTLDRNESDLFVSALSPSSI----GD----IHPLQEVLTDDGDY 73
            ||....|||.:.||.|    .||..||        |.|..:    |:    .:.|||:|..| ..
  Rat    17 AAEAEADEEADPPATGPQTSQVTEWRN--------LDPRRMQMPQGNPLLLSYTLQELLAKD-TV 72

  Fly    74 FISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDLLVGKYMRLGRII 138
            .:.::   |:|.|..: .::.|:|:::    :||.|.:   ||::||:..|::|:.|:..  |::
  Rat    73 QVELI---PEKKGLFL-KHVEYEVSSQ----RFKSSVY---RRYNDFVVFHEVLLHKFPY--RMV 124

  Fly   139 PPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLRVDL---DFMNFL 200
            |..|.|.::|:.:                |::|.||.||:||::..|:||....|:   .|::|.
  Rat   125 PALPPKRVLGADR----------------EFIEGRRRALKRFINLVARHPPFSEDVLLKLFLSFS 173

  Fly   201 ESDQE--------------------------LPRSVNTSALSGAGVIR----LFNKVGETVNKIT 235
            .||.:                          ||..:.|.......:||    .|.|:.:...:|.
  Rat   174 GSDVQHKLKEAAQCVGDEFTNCKLAARAKDFLPADIQTQFAMSRELIRNVYNSFYKLRDRAERIA 238

  Fly   236 YKMDENDP---WFDDKITEVESLDANLQK---LH-NAMKSLVTSRRELSLLTGLVAKSAAMLSTC 293
            .:..:|..   .|..:::.:.|....|..   || :...||..:.:.||:...|:|..||.....
  Rat   239 SRAIDNAADLLIFGKELSALGSDTTPLPSWAALHLSTWGSLKQALKGLSVEFALLADKAAQQGKK 303

  Fly   294 EEHTGLSRALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQY 358
            ||:           ||.||:.|         |..|.:..||......  |.:.|:..:|...:..
  Rat   304 EEN-----------DVVEKLNL---------FLDLLQSYKDLCERHE--KGVLHKHQRALHKYGL 346

  Fly   359 AQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQGKVQ 397
            .:.|:......|       ..:.::|.:..:.|.:..:|
  Rat   347 MKRQMMSAAHGR-------EPESVEQLESRIVEQENVIQ 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 34/130 (26%)
BAR_SNX1_2 232..455 CDD:153307 34/173 (20%)
Snx8NP_001099382.2 PX_SNX8_Mvp1p_like 70..173 CDD:132776 34/132 (26%)
BAR_SNX8 190..434 CDD:153281 41/218 (19%)

Return to query results.
Submit another query.