DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and atg20

DIOPT Version :10

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_587995.1 Gene:atg20 / 2539317 PomBaseID:SPCC16A11.08 Length:534 Species:Schizosaccharomyces pombe


Alignment Length:443 Identity:85/443 - (19%)
Similarity:158/443 - (35%) Gaps:127/443 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 EVLTDD---GDYFISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDL 126
            ||::.|   ..|...|.:.......|  |||:.|::..:      |||.:   ||:|||..:..|
pombe    12 EVISSDSGGSGYSTEIQIVGTVTSSD--GSYVEYEIVHQ------KRSVW---RRYSDFESLVKL 65

  Fly   127 LVGKYMRLGRIIPPAPSK-NIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVL 190
            :..:|.  ..|:||.|.| :::...|   .|::::...    |::..|...||.|:.:...||.:
pombe    66 MRRQYP--AAIVPPIPGKQSLLSYAK---HPRKAKSDA----EFLNFRSRMLELFLRQCLLHPCI 121

  Fly   191 RVDLDFMNFLE---------SDQELPRSVNTSALSGAGVIRLFNKVGETVNKITYKMDENDPWFD 246
            |.:..|..|:.         |..:||:..||..|                 ::.....|:|| |.
pombe   122 RSNPIFDKFIHSTVSWHVTLSSLDLPKDSNTDPL-----------------RLPPIATEHDP-FA 168

  Fly   247 DKITEVESLDAN---------LQKLHNAMKSLVTSRRELSLLTGL-------------------- 282
            ...:.:..:.||         |:.:|:.......|..|.|...|.                    
pombe   169 HLRSSMPLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECHPPTSDMQPTHELNES 233

  Fly   283 -----------VAKSAAMLSTCEEHTGLSR-------ALSNLADVEEKIELLRSEQANSDFFILA 329
                       ...|.:.||..:..:.:|.       .|.:|....:::.:.|....:|    |:
pombe   234 PSTPTAPDFPHYNSSPSELSPTQRRSSISNGKDAPSPVLKDLTSYTQEVIVCRKFLHHS----LS 294

  Fly   330 EFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRENRGRFELANRADKLDQAQQEVDEWQG 394
            ..|...|.....::....:...||.:       |:...|    .:|||....:..|    .|:.|
pombe   295 PSIHSTLSSISKMESCLSKLGSAFHS-------LTALNE----IQLANHLQVIANA----FEFSG 344

  Fly   395 K-VQRCQQQFDDISAEIKREMERFELT-------RVKDFKVNIIKYIEDQMAH 439
            . .:..:|:|:  |:..::.::..:|.       :.|..|:....:::||:.|
pombe   345 MYAKEFEQEFN--SSVYEKMVQSMQLAKCAADALKYKQLKIQQRDFLQDQLIH 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 33/137 (24%)
BAR_SNX1_2 232..455 CDD:153307 42/263 (16%)
atg20NP_587995.1 COG5391 1..530 CDD:227680 85/443 (19%)

Return to query results.
Submit another query.