DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and Snx30

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_766056.1 Gene:Snx30 / 209131 MGIID:2443882 Length:437 Species:Mus musculus


Alignment Length:478 Identity:113/478 - (23%)
Similarity:204/478 - (42%) Gaps:111/478 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 SPE--HTRDFAEVDI---NNGAATGSEDEEEEVPAPGSVTLDRNESDLFVSALSPSSIGDIHPLQ 64
            ||:  ..|.|.:.|:   |.|...|:..     ||..|..|:|.:.|           .||    
Mouse    40 SPDLLMARSFGDKDLILPNGGTPAGTAS-----PASSSSLLNRLQLD-----------DDI---- 84

  Fly    65 EVLTDDG---DYFISIVVSDPQKIGDGMGSYLAYKVTTKTNIPKFKRSEFSTLRRFSDFLGIHDL 126
                 ||   |.|::  |.||:|....|.:|:.|::|||:...:|...|:|..||:.||..:.:.
Mouse    85 -----DGEARDLFVT--VDDPKKHVCTMETYITYRITTKSTRVEFDLPEYSVRRRYQDFDWLRNK 142

  Fly   127 LVGKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTAQHPVLR 191
            |  :..:...:|||.|.|.::.....:.|           :|:||.||.||::|:.|...||||.
Mouse   143 L--EESQPTHLIPPLPEKFVVKGVVDRFS-----------EEFVETRRKALDKFLKRITDHPVLS 194

  Fly   192 VDLDFMNFLESDQELPRSVNTSALSGAGVIRLFNKVGETVNKIT--YKMDEN-------DPWFDD 247
            .:..|..||.:     :.:|.....|   |.|.::|||:|..:|  ||:...       ..:.|.
Mouse   195 FNEHFNVFLTA-----KDLNAYKKQG---IALLSRVGESVKHVTGGYKLRSRPLEFAAISDYLDT 251

  Fly   248 KITEVESLDANLQKLHNAMKSLVTSRREL-------SLLTGLVAKSAAMLSTCEEHTGLSRALSN 305
            ...::.::|...|::.......:...||.       |.|.|.:|:....:|.|..:  .|.||..
Mouse   252 FALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSALEGELAEPLEGVSACIGN--CSTALEE 314

  Fly   306 LAD--VEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFHERVKAFQNWQYAQMQLSKRRE 368
            |.|  .||.:.:||      ::.:.::.:|..|.....::..:..:::|          ::.|:|
Mouse   315 LTDDITEEFLPVLR------EYVLYSDSMKGVLKKRDQVQAEYEAKLEA----------VALRKE 363

  Fly   369 NRGRFELANRADKLDQAQQEVDEWQGKVQRCQQQFDDISAEIKREMERFELTRVKDFKVNIIKYI 433
            .|.:..    ||               |::||.:.:..:|::|.:|||::..:..||:..::...
Mouse   364 ERPKVP----AD---------------VEKCQDRMECFNADLKADMERWQSNKRHDFRQLLVGLA 409

  Fly   434 EDQMAHQQQIVSYWEAFAPFARE 456
            :..:.:.::.:..||:..|..:|
Mouse   410 DKNIQYYEKCLMAWESIIPLLQE 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 40/127 (31%)
BAR_SNX1_2 232..455 CDD:153307 44/240 (18%)
Snx30NP_766056.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..45 2/4 (50%)
PX_SNX7_30_like 91..206 CDD:132770 41/134 (31%)
BAR_SNX30 190..429 CDD:153351 58/283 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5391
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D947320at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.850

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