DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Snx1 and SNX18

DIOPT Version :9

Sequence 1:NP_608777.1 Gene:Snx1 / 33560 FlyBaseID:FBgn0031534 Length:458 Species:Drosophila melanogaster
Sequence 2:NP_443102.2 Gene:SNX18 / 112574 HGNCID:19245 Length:628 Species:Homo sapiens


Alignment Length:441 Identity:98/441 - (22%)
Similarity:155/441 - (35%) Gaps:118/441 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 DINNGAATGSEDEEEEVPAP-GSVTLDR--NESDLFVSALSPSSIGDIHPLQEV--LTDDGD--- 72
            |::.|:..||...:.....| .|.|:.|  |....||     .|.|:...|.|.  ...|||   
Human   200 DLSLGSRGGSVPPQHHPSGPKSSATVSRNLNRFSTFV-----KSGGEAFVLGEASGFVKDGDKLC 259

  Fly    73 --------------YFISIVVSDPQKIG--DGMGSYLAYK-VTTKTNIPKFKRSEFSTLRRFSDF 120
                          |.....:.||.|..  .||.||::|| |.|.|.:|        ..||:..|
Human   260 VVLGPYGPEWQENPYPFQCTIDDPTKQTKFKGMKSYISYKLVPTHTQVP--------VHRRYKHF 316

  Fly   121 LGIHDLLVGKYMRLGRIIPPAPSKNIIGSTKVKISPQQSEPGTPMTQEWVEIRRAALERFVHRTA 185
            ..::..|..|:..:.  :|..|.|...|.               ..::::..||..|..:::..|
Human   317 DWLYARLAEKFPVIS--VPHLPEKQATGR---------------FEEDFISKRRKGLIWWMNHMA 364

  Fly   186 QHPVLRVDLDFMNFL----ESDQEL----PRSVNTSALSGAGVIRLFN-------KVGETVNKI- 234
            .||||.....|.:||    .:|::.    .|......:.||......:       .:.|..:|| 
Human   365 SHPVLAQCDVFQHFLTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKID 429

  Fly   235 -----TYKMDENDPWFDDKITEVESLDANLQKLHNAMKSLVTSRRELSLLTGL------VAKSAA 288
                 |.|||                |:.||..|.|.:   .:|::   :||.      |.:|..
Human   430 GFKCFTKKMD----------------DSALQLNHTANE---FARKQ---VTGFKKEYQKVGQSFR 472

  Fly   289 MLSTCEE------HTGLSRALSNLADVEEKIELLRSEQANSDFFILAEFIKDYLGLFGAIKCIFH 347
            .||...|      ..||::|::...|..:.|..|.:||...|...:.:.:..|.|.......|.|
Human   473 GLSQAFELDQQAFSVGLNQAIAFTGDAYDAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIH 537

  Fly   348 ERVKAFQNWQYAQMQLSKRRENRGR------FELANRADKLDQAQQEVDEW 392
              |:..:.|...|:..|.....:|.      ..::......::|.::||.|
Human   538 --VQKGKAWPLEQVIWSVLCRLKGATLTAVPLWVSESYSTGEEASRDVDAW 586

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Snx1NP_608777.1 PX_SNX1_2_like 75..203 CDD:132769 33/134 (25%)
BAR_SNX1_2 232..455 CDD:153307 41/185 (22%)
SNX18NP_443102.2 SH3_SNX18 4..58 CDD:212830
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 62..188
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 200..224 6/23 (26%)
PX_SNX18 276..403 CDD:132819 35/151 (23%)
BAR 415..>541 CDD:299863 34/149 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1659
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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