DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant2 and galnt6.2

DIOPT Version :9

Sequence 1:NP_608773.2 Gene:Pgant2 / 33556 FlyBaseID:FBgn0031530 Length:633 Species:Drosophila melanogaster
Sequence 2:XP_031753046.1 Gene:galnt6.2 / 100486937 XenbaseID:XB-GENE-1000674 Length:623 Species:Xenopus tropicalis


Alignment Length:625 Identity:241/625 - (38%)
Similarity:324/625 - (51%) Gaps:109/625 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 GSGA-DDPGGNVILI--GSVKDFERNAVHGLK-----------LNGIVALEETSQGLSGGTGGPG 130
            |:|| |||....|::  ..:.:..|.|:..||           :..:..:||....|      ||
 Frog    32 GNGAKDDPWIKNIVVRKDQMINMMRGAMKNLKDSIPKLQIMAPVQEVRPVEEKKSCL------PG 90

  Fly   131 -----------GRLPVAPSGRGTEVEYFNEAGYIR----AGALRNGEDPYIRNRFNQEASDALPS 180
                       .|.|..|:..|.:.:     |:|:    ...:...|..:.::.||..|||.:..
 Frog    91 YYTPAELKPFMERPPQDPNSPGADGK-----GFIKNIWTEEEVEEKEKGFDKHCFNAFASDRISL 150

  Fly   181 NRDI-PDTRNPMCRTKKYRE--DLPETSVIITFHNEARSTLLRTIVSVLNRSPEHLIREIVLVDD 242
            :|.: ||||...|..:|::.  .||.||:||.|||||.||||||:.|||..||..|::||:||||
 Frog   151 HRALGPDTRPLECIEQKFKRCPSLPTTSIIIVFHNEAWSTLLRTVYSVLYTSPAILLKEIILVDD 215

  Fly   243 YSDHPEDGLELAKIDK-------VRVIRNDKREGLVRSRVKGADAAVSSVLTFLDSHVECNEMWL 300
            .|   ||.....|:|.       |::.|..:|:||:.:|:.||..|...||||||:|.||...||
 Frog   216 AS---EDEYLKEKLDDYVKALQIVKIARQKERKGLITARLLGASIATGEVLTFLDAHCECFHGWL 277

  Fly   301 EPLLERVREDPTRVVCPVIDVISMDNFQYIG-----ASADLRGGFDWNLIFKWEYLSPSERAMRH 360
            ||||.||.||.|.||.|.|..|:.:.|:: |     ...:.||.|||:|.|.||.:..::...| 
 Frog   278 EPLLSRVAEDHTAVVSPDITAINYNTFEF-GKPVQQGKMNSRGNFDWSLAFNWEAIPAADEKQR- 340

  Fly   361 NDPTTAIRTPMIAGGLFVIDKAYFNKLGKYDMKMDVWGGENLEISFRVWQCGGSLEIIPCSRVGH 425
            .|.|..|:||..|||||.|.||||..:|.||.:|::|||||:|:|||||||||.|||||||.|||
 Frog   341 KDETYPIKTPTFAGGLFSISKAYFEHIGSYDEEMEIWGGENVEMSFRVWQCGGKLEIIPCSVVGH 405

  Fly   426 VFRKRHPYTFPGGSGNVFARNTRRAAEVWMDDYKQHYY----NAVPLAKNIPFGNIDDRLALKEK 486
            |||.:.|:|||.|: .|..||..|.|||||||||..||    .|..:||...||:|..||.||..
 Frog   406 VFRTKSPHTFPKGT-QVILRNQVRLAEVWMDDYKVLYYRRNEQAAKIAKEKSFGDISKRLKLKAD 469

  Fly   487 LHCKPFKWYLENVYPDLQAP--DPQEVGQFRQDSTE-CLDTMGHLIDGTVG-----------IFP 537
            |.||.|.|||||:||::..|  ||...|..:.:.|: |:|         ||           ::|
 Frog   470 LQCKNFTWYLENIYPEMFVPDRDPTYYGAIKNEGTQNCID---------VGENNNYGSQLPIMYP 525

  Fly   538 CHNTGGNQEWAFTKRGEIKHD---DLCL---------TLVTFA-RGSQVVLKACDDSENQRWIMR 589
            ||..||||.:.::...|::|:   .|||         .||... :|....:..     |:.|...
 Frog   526 CHGMGGNQYFEYSTHKELRHNLKTQLCLCSKYEPGPVKLVDCQYKGQNTTVPG-----NEEWEFT 585

  Fly   590 EGGLVRHYKINVCLDSRDQSQQGVSAQHCNSALGTQRWSF 629
            :..|:|:...|:||.::....   |...||.....|.|||
 Frog   586 KDRLIRNVGSNMCLTAQGDHP---STAECNPDDIDQLWSF 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant2NP_608773.2 WcaA 200..>432 CDD:223539 127/243 (52%)
pp-GalNAc-T 205..500 CDD:133004 163/310 (53%)
Ricin_B_lectin 511..627 CDD:279046 32/140 (23%)
RICIN 513..629 CDD:238092 32/140 (23%)
galnt6.2XP_031753046.1 OppC_N 1..>27 CDD:403960
pp-GalNAc-T 178..483 CDD:133004 163/310 (53%)
Ricin_B_lectin 496..620 CDD:395527 32/140 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.